PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024966908.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 464aa MW: 51675.1 Da PI: 7.1408

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024966908.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.1	6.7e-32	156	213	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkver+ +++++ei+Y+g+H h+k XP_024966908.1 156 EDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERNL-EGHITEIVYKGNHSHSK 213 8**************************************.*************85 PP
2	WRKY	106.4	1.4e-33	303	361	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+ XP_024966908.1 303 LDDGYRWRKYGQKVVKGNPNPRSYYKCTFNGCPVRKHVERASHDLRAVITTYEGKHNHD 361 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MASSGGSLNP STTTSQYPSF CFSTSFTDLM SSSHEDSNWA SLGGGNNGIE SPKQPPTPFS 60 PSSFLSTPTA AGFSSNQFLD SPFFPFNSNI VPSPTTGNFP EETKYSDFSF LPQTRPLSSK 120 MEEQVKSQPQ DWSTSEIQKT KSESTHQYLS DQTRLEDGYN WRKYGQKQVK GSENPRSYYK 180 CTYPNCPTKK KVERNLEGHI TEIVYKGNHS HSKPQNAKKS SSNSYNDVPI DNNHFDSSAS 240 FGEDDFEQAS SLSKSGDDHE NEPEAKRWKG ETENEAISGP GAGSRTVREP RIVVQTTSDI 300 DILDDGYRWR KYGQKVVKGN PNPRSYYKCT FNGCPVRKHV ERASHDLRAV ITTYEGKHNH 360 DVPAPRGSGS YAINRPPTTN NNNNANNNYA LMAIRPSANY STNIQNTTGR LGGQPPYTLQ 420 MLQNPGNYGH PDNSYTNQNR GTERSVSRAK EEPEDDLFFN SFLG

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MASSGGSLNP STTTSQYPSF CFSTSFTDLM SSSHEDSNWA SLGGGNNGIE SPKQPPTPFS  60
PSSFLSTPTA AGFSSNQFLD SPFFPFNSNI VPSPTTGNFP EETKYSDFSF LPQTRPLSSK  120
MEEQVKSQPQ DWSTSEIQKT KSESTHQYLS DQTRLEDGYN WRKYGQKQVK GSENPRSYYK  180
CTYPNCPTKK KVERNLEGHI TEIVYKGNHS HSKPQNAKKS SSNSYNDVPI DNNHFDSSAS  240
FGEDDFEQAS SLSKSGDDHE NEPEAKRWKG ETENEAISGP GAGSRTVREP RIVVQTTSDI  300
DILDDGYRWR KYGQKVVKGN PNPRSYYKCT FNGCPVRKHV ERASHDLRAV ITTYEGKHNH  360
DVPAPRGSGS YAINRPPTTN NNNNANNNYA LMAIRPSANY STNIQNTTGR LGGQPPYTLQ  420
MLQNPGNYGH PDNSYTNQNR GTERSVSRAK EEPEDDLFFN SFLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-119	WRKY family protein