PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024967034.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 212aa MW: 24579.2 Da PI: 6.3971

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024967034.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.3	2.4e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +lv+++ +G +W + +++ g+ Rt+k+c++rw +yl XP_024967034.1 14 KGSWSAEEDRKLVNYISTYGISNWCKMSSYAGLSRTGKSCRLRWMNYL 61 799*******************************************97 PP
2	Myb_DNA-binding	57.2	3.7e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++++++++ lG++ W++Iar+++ gR+++++k++w+++l XP_024967034.1 67 RGNFTDEEEKIILHYHSVLGNR-WAAIARKIP-GRSDNEIKNHWHTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence
MRTPSYDLRP SLRKGSWSAE EDRKLVNYIS TYGISNWCKM SSYAGLSRTG KSCRLRWMNY 60 LNPEIKRGNF TDEEEKIILH YHSVLGNRWA AIARKIPGRS DNEIKNHWHT HLKKRINYPL 120 SITEPEEITK SSDLDDDESS VESSVEPADC FFSSTVSNGH TSSSCIFDMS SRSYHEQQEV 180 KLETGYNYDI SSPGTIQDIK SFWEQLYYAN YD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06180.1	3e-48	MYB family protein