PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024967044.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 231aa MW: 26907 Da PI: 6.0946

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024967044.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.7	1.8e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+teEd +lv++++++G +W + + + g+ Rt+k+c++rw +yl XP_024967044.1 14 KGFWSTEEDRKLVNYIRKYGISNWCKMSLYAGLSRTGKSCRLRWMNYL 61 688*******************************************97 PP
2	Myb_DNA-binding	56.4	7e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eE++ +++++ lG++ W++Iar+++ gR+++++k++w++ XP_024967044.1 67 RGNFTNEEEKTILQYHSILGNR-WSAIARKVP-GRSDNEIKNHWHTN 111 89******************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MRDPSCDSQS GLRKGFWSTE EDRKLVNYIR KYGISNWCKM SLYAGLSRTG KSCRLRWMNY 60 LNPNIIRGNF TNEEEKTILQ YHSILGNRWS AIARKVPGRS DNEIKNHWHT NLKKRIITQD 120 HPVPTIKPKE TTKSIDLHDV ESSVETPTSH VFSSLSDGDT TSLCKLDISS RYDHEQLEVE 180 NESDYHISSP GTILDIKSFW EQLYYADEDL ELQNLFQDTS FDQIFIDNLY S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28110.1	3e-49	MYB family protein