PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024967058.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 236aa MW: 27536.6 Da PI: 6.6054

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024967058.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.8	2.8e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd +lv++++ +G +W + + + g+ Rt+k+c++rw +yl XP_024967058.1 14 KGSWSVEEDRKLVNYINNYGISNWCKMSIYAGLARTGKSCRLRWMNYL 61 799*******************************************97 PP
2	Myb_DNA-binding	53.5	5.4e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++++++++ lG++ W+ Iar+++ gR+++++k++w+++l XP_024967058.1 67 RGNFTNEEEKIILHYHSVLGNK-WSMIAREVP-GRSDNEIKNYWHTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MRHPSYDLQS GLRKGSWSVE EDRKLVNYIN NYGISNWCKM SIYAGLARTG KSCRLRWMNY 60 LDPIIKRGNF TNEEEKIILH YHSVLGNKWS MIAREVPGRS DNEIKNYWHT HLKKRSITQG 120 HPVPITKPKE MTKSSDVDNV ESFVKSLVLN SADHFFARTF SDKSSTSDHE QQKVEFEETS 180 YYDISSPGTI QDFKSFRQQL YFASNTDQDS ELQNPLQDPT SDHEFFVDDS YNLQDI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65230.1	2e-49	MYB family protein