PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024967104.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family YABBY
Protein Properties Length: 210aa    MW: 23402.1 Da    PI: 8.1487
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024967104.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY215.12.2e-66111814170
           YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesast 94 
                      +s+eq+Cy+ C+fCn +lavsvP +slf +vtvrCGhCt+llsvn+++a+    q  + +   d+s   + ++++++++++ + n++++    +
  XP_024967104.1  11 GTSPEQLCYIPCSFCNIVLAVSVPCSSLFDMVTVRCGHCTNLLSVNMSMAAgvnnQCHSNSTSQDDSSSSHHHDHHHHHHHQQDPNHTSRVDLGS 105
                     5789*********************************************9944421111111112222222222222222222222222222222 PP

           YABBY  95 svssekl.senedeevp.rvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       s+  + +++   +++  +  ++rPPekrqrvPsayn+fik+eiqrika+nP+ishreafsaaaknWahfP+ihfgl
  XP_024967104.1 106 --STRCMpTKSPPPSIAdDQRTINRPPEKRQRVPSAYNQFIKQEIQRIKANNPNISHREAFSAAAKNWAHFPHIHFGL 181
                     ..222332223333333033459*****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MSSTSCCIEV GTSPEQLCYI PCSFCNIVLA VSVPCSSLFD MVTVRCGHCT NLLSVNMSMA  60
AGVNNQCHSN STSQDDSSSS HHHDHHHHHH HQQDPNHTSR VDLGSSTRCM PTKSPPPSIA  120
DDQRTINRPP EKRQRVPSAY NQFIKQEIQR IKANNPNISH REAFSAAAKN WAHFPHIHFG  180
LMLEGNNHQT KSNELSYVQG SKKRLKSTAE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.11e-66YABBY family protein