PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024967245.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 233aa    MW: 26343.9 Da    PI: 4.4544
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024967245.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.43e-144487755
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                      Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++Lq
  XP_024967245.1 44 VSERNRRKKLNDRLFALRAVVPNiS------KMDKASIIKDAIDYIQKLQ 87
                    57*********************66......******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MEDYLESFLQ SDDCSWGILE GTFSGYYSSS PDGPQSSTTS KNIVSERNRR KKLNDRLFAL  60
RAVVPNISKM DKASIIKDAI DYIQKLQHQE RTIQAELMEL ESRKLELENL DFYEETEFLL  120
MEGSNNKKLE QTLGSSGSRP YPIQVIQLSV SYVGENTVLV SLKCSKRGDT IVRLCEVFES  180
LKLKIVTANI SAFSESLSNT LFVQAEEEDM DILRIQIEGA ISVLNDPQSL MSM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-73bHLH family protein