PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024967344.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 235aa    MW: 26072.6 Da    PI: 7.5089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024967344.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-1181128454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++  rE+ RRd++N++f eL ++l +    + +K +Ka+iL  Av+ + +L
  XP_024967344.1  81 SKACREKLRRDKLNDKFVELASILEPG---RPPKIDKAAILVDAVRMVTQL 128
                     5678**********************8...89**************99988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MVSPENTNWI YEYGLIEDIQ VPDANFTLPA SGFTWPVQPT FNGSSSNPSA ELDGSIVDSD  60
GHNDSRSKKR GRPDSCSGTS SKACREKLRR DKLNDKFVEL ASILEPGRPP KIDKAAILVD  120
AVRMVTQLRR EAQKLKDSSL DLQEKIKELK AEKNELRDEK QRLKMEKDKL EQQANTMNAQ  180
PSFMAPPPAA AFARSQAVGN KLVPVISYPG MAMWQFMPPA AVDTSQDHVL HPPVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.15e-97bHLH family protein