PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024967348.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TCP

Protein Properties

Length: 414aa MW: 45660 Da PI: 6.7619

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024967348.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.7	2.1e-34	49	166	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................... 65 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai+el+++ XP_024967348.1 49 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDELAELpawkptaatinhgsttivnfeqnpddenlnh 143 79**************************************************************7777666655555444443332222222211 PP TCP 66 ...ssssaseceaesssssasnsssg.................k 89 s + + XP_024967348.1 144 hqlS---------------------HleehpdddivdnhmvntQ 166 1110.....................0222222223333333330 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MAENYQYHHH ELHHHPEQKP TRPSRLGLRN TGGGGEIVEV QGGHIVRSTG RKDRHSKVCT 60 AKGPRDRRVR LSAHTAIQFY DVQDRLGYDR PSKAVDWLIK KAKSAIDELA ELPAWKPTAA 120 TINHGSTTIV NFEQNPDDEN LNHHQLSHLE EHPDDDIVDN HMVNTQNSTF LPTSLDSNSI 180 ANTIKSFFPM GGGGSSTPVN INPSAMQFHR SFPTSELLSR PTSNQNQDLK LSLQSFQDPI 240 LHHHQPPPHH HHHHHQQQQA AEQGNNNSMF FDGSGWPENQ PGGFQRLVAW GGGGGGGDAV 300 STGFVFSSPP AAQTPVFLQP LFGQTTNNQL FNYISQRGPL QSSNSPPVRA WVDPPPFSGA 360 DQHQTPAFHH PSSMPGFTSG TFPGFHIPAR IQGEEEEHDG ISDKPSSVSS DSRD

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MAENYQYHHH ELHHHPEQKP TRPSRLGLRN TGGGGEIVEV QGGHIVRSTG RKDRHSKVCT  60
AKGPRDRRVR LSAHTAIQFY DVQDRLGYDR PSKAVDWLIK KAKSAIDELA ELPAWKPTAA  120
TINHGSTTIV NFEQNPDDEN LNHHQLSHLE EHPDDDIVDN HMVNTQNSTF LPTSLDSNSI  180
ANTIKSFFPM GGGGSSTPVN INPSAMQFHR SFPTSELLSR PTSNQNQDLK LSLQSFQDPI  240
LHHHQPPPHH HHHHHQQQQA AEQGNNNSMF FDGSGWPENQ PGGFQRLVAW GGGGGGGDAV  300
STGFVFSSPP AAQTPVFLQP LFGQTTNNQL FNYISQRGPL QSSNSPPVRA WVDPPPFSGA  360
DQHQTPAFHH PSSMPGFTSG TFPGFHIPAR IQGEEEEHDG ISDKPSSVSS DSRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	4e-76	TCP family protein