PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024967676.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 350aa    MW: 39074.8 Da    PI: 6.9656
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024967676.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.8e-06134154526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f++ G Ck Gd C FaHg
  XP_024967676.1 134 ACPEFRK-GNCKKGDGCEFAHG 154
                     7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
MVGDGNQHGM MVHVPPWTTM MDDPVAGISP FSPRSPNAIN SLTSMEDYAY FLRSDAALRR  60
YLEEDLDGEG SGSGCTDFDI TSEAYACDSF RMYEFKVRKC SRGRSHDWTD CPYAHPGEKA  120
RRRDPRKYSY SGTACPEFRK GNCKKGDGCE FAHGVFECWL HPHRYRTQPC KDGVNCRRRV  180
CFFAHTPEQL RVVSPHTDSY DGSSLKTLPA FFSSPSETST PPSDSPPMSP MDSSLSRSLG  240
SVSVSDMLSS LRRLQLNKTP SMVTPWNLQM GRSLASPRSG FYSLPSTPTR PVTRGVGFSE  300
IWEEEPAMER VESGRDLRAK MFEKLSKENG VDSPGEGPNP DVGWISELVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-103C3H family protein