PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024967681.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 512aa MW: 55871.1 Da PI: 6.3654

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024967681.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.6	1.7e-14	234	293	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g XP_024967681.1 234 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 293 57*****************666664478446******99***********98 PP
2	AP2	49.8	8.5e-16	336	387	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_024967681.1 336 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 387 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MAPENNWLSF SLSPMEMFTS STSQPPHQYY FNDNIYANGW ANGGKTSTMY TGDNSNSHGD 60 VKDGGDSPLF RSFMESHINQ QQAPKLEDFL GGDTTTTAHS MQSFRYTDGS QTETQDSSSL 120 THLYDGSSSV YFSDQQDLNG ITGTAGFQTF STNSGSEVDD SATHLTEFAG QSIESGSELA 180 YVQCPMNALS LGITTSSSGG ATHQVSNQKA IVAVDSGDQN NCKKIADTFG QRTSIYRGVT 240 RHRWTGRYEA HLWDNSCRRE GQARKGRQVY LGGYDKEDKA ARAYDLAALK YWGPTATTNF 300 PVANYAQELE DMKHATKQEF IASLRRKSSG FSRGASIYRG VTRHHQQGRW QARIGRVAGN 360 KDLYLGTFAT EEEAAEAYDI AAIKFRGVNA VTNFEMSRYD VEAISSSSLP VGGSAKRLKV 420 SSEVEQKPPL ISNHHQLPPY SSSNSGSSIS FGAVPPVYGL SFDPNSTPMY HHQSLFQHLQ 480 SGGGNGGTVE TSGAMGLVAP SAEFFVWPNQ TY

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MAPENNWLSF SLSPMEMFTS STSQPPHQYY FNDNIYANGW ANGGKTSTMY TGDNSNSHGD  60
VKDGGDSPLF RSFMESHINQ QQAPKLEDFL GGDTTTTAHS MQSFRYTDGS QTETQDSSSL  120
THLYDGSSSV YFSDQQDLNG ITGTAGFQTF STNSGSEVDD SATHLTEFAG QSIESGSELA  180
YVQCPMNALS LGITTSSSGG ATHQVSNQKA IVAVDSGDQN NCKKIADTFG QRTSIYRGVT  240
RHRWTGRYEA HLWDNSCRRE GQARKGRQVY LGGYDKEDKA ARAYDLAALK YWGPTATTNF  300
PVANYAQELE DMKHATKQEF IASLRRKSSG FSRGASIYRG VTRHHQQGRW QARIGRVAGN  360
KDLYLGTFAT EEEAAEAYDI AAIKFRGVNA VTNFEMSRYD VEAISSSSLP VGGSAKRLKV  420
SSEVEQKPPL ISNHHQLPPY SSSNSGSSIS FGAVPPVYGL SFDPNSTPMY HHQSLFQHLQ  480
SGGGNGGTVE TSGAMGLVAP SAEFFVWPNQ TY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.2	1e-150	AP2 family protein