PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024967727.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 210aa MW: 22623.6 Da PI: 6.9666

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024967727.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91.1	1.4e-28	6	106	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l++ + +++q++++ +v+k+FG++ ++++l+++pe +r+++++sl+ eA+ r+ +Pv+Gavg++++++++++q+ XP_024967727.1 6 SCNGCRVLRKGCNENCILRQSLcaiesAQAQANATVFVAKFFGRAGLMSFLSSVPEYQRPALFQSLLSEACGRTVNPVNGAVGLLWTGNWHVCQS 100 6*******************555444466799*********************************************************** PP DUF260 91 kaelal 96 ++e+ l XP_024967727.1 101 AVETIL 106 998765 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MSSTMSCNGC RVLRKGCNEN CILRQSLCAI ESAQAQANAT VFVAKFFGRA GLMSFLSSVP 60 EYQRPALFQS LLSEACGRTV NPVNGAVGLL WTGNWHVCQS AVETILRGGS ISAMPELFPV 120 GATQVMAESD NASEAINCNF DDVANLIPEN LELRLSRSGL KEEDARRSSG NGRWTEKLRT 180 AKSSDVSETT TSESGTGSAC RDTKLLRLFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	3e-64	LBD family protein