PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024967735.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 82aa    MW: 9125.22 Da    PI: 10.1539
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024967735.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-081259247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     g+WT    + + +a + + ++   +W+ +a+ ++ g+t+ ++  ++q +
   XP_024967735.1 12 GSWTDKQNKAFEKALAVFDKDtpdRWHNVAKAVP-GKTAQEVERHFQLL 59
                     89********************************.***********965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    
MASSSMSSRG SGSWTDKQNK AFEKALAVFD KDTPDRWHNV AKAVPGKTAQ EVERHFQLLV  60
EDINSIESGR VPFPKYRTTK GA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-35MYB_related family protein