PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024967775.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 888aa    MW: 98528.9 Da    PI: 6.9845
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024967775.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.51.1e-22129230199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  XP_024967775.1 129 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDSVWTFRHIFRGQPKRHLLTTGWSLFVSGKRLSAGDSVLFI--RDEK 220
                     99*****************************9445444.38************************************************..5688 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  XP_024967775.1 221 QQLLLGIRRA 230
                     889****997 PP
2Auxin_resp114.21.2e-37255338183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekveka.lkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPras+seFv++++k+ ka +++++s+GmRf+m+fete+s +rr++Gt++g++dld vrW+nS+Wr+++
  XP_024967775.1 255 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAaCSNQLSLGMRFRMMFETEESGTRRYMGTITGINDLDGVRWKNSQWRNIQ 338
                     79***************************98776167********************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 888 aa     Download sequence    
MKVPGVTLIA TNHGEGAEKF MINPELWQAC AGPLVNLPAA GTHVVYFPQG HSEQVSASMK  60
KGMDAQIPSY PNLQSKLLCI LHNVTLHADP ETDEVYAQLT LQPVTAFDKE ALLRSDLSMK  120
SYKPQTEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF SMQPPAQELV ARDLHDSVWT  180
FRHIFRGQPK RHLLTTGWSL FVSGKRLSAG DSVLFIRDEK QQLLLGIRRA TRQPTNLSSS  240
VLSSDSMHIG VLAAAAHAAA NNSPFTVFYN PRASPSEFVI PLAKYYKAAC SNQLSLGMRF  300
RMMFETEESG TRRYMGTITG INDLDGVRWK NSQWRNIQVG WDESTAGERR NRVSIWEIEP  360
VTAPFFICPT PFYGLNRQRY PGIPDGESAD LDNFFKRTMP WVGEDMSMKD TGLSLVQWMN  420
MQQSSIQSNH LNPLAAPVLQ NYGGPDMSRI LPHDSLQFNS LRSTAQLDQL KNQLVPSTVN  480
PLASMMQPLQ QLASPSLQTT KQNVVNQSLP QNRVQSHIQP QNALQQQSSV QNPQLHRNLP  540
QQMAEVSQSQ QKISLPPEFP DQQQLQMPEN QVQHLQKLHQ RQQSLLAHQS AQLQPQDQQK  600
PLADQQQMLR NNSQTNIWFT HLSQQPKQTD QLLTYGNGLL MGTAATGGQS GITDDVPSGS  660
TSPSTNNGPI MLPSVIDGRS YRSTSMGGEE ITQASAHLMN TSGLETVSPN IEFFKELQQK  720
SGMKPSDNIS ESQNKGFIAP QIYLHHVFGT QVGYLDSSSS GTSVCVSQND VHLQQQNSNQ  780
LSFDSQPLPI QGGEVEDDHI PFGTNNENHL GMIPDPLITK RMMGCGKDFQ NNQPDVSSQS  840
FGVPDMSFNS IDSTINGGSL LNSGVWAPVP AQPQPFQRMR TYTKATRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein