PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024967777.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 882aa    MW: 98561.6 Da    PI: 6.663
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024967777.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.51.1e-2225126199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  XP_024967777.1  25 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDSVWTFRHIFRGQPKRHLLTTGWSLFVSGKRLSAGDSVLFI--RDEK 116
                     99*****************************9445444.38************************************************..5688 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  XP_024967777.1 117 QQLLLGIRRA 126
                     889****997 PP
2Auxin_resp114.21.2e-37151234183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekveka.lkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPras+seFv++++k+ ka +++++s+GmRf+m+fete+s +rr++Gt++g++dld vrW+nS+Wr+++
  XP_024967777.1 151 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAaCSNQLSLGMRFRMMFETEESGTRRYMGTITGINDLDGVRWKNSQWRNIQ 234
                     79***************************98776167********************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    
MQFDKEALLR SDLSMKSYKP QTEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDFSMQP  60
PAQELVARDL HDSVWTFRHI FRGQPKRHLL TTGWSLFVSG KRLSAGDSVL FIRDEKQQLL  120
LGIRRATRQP TNLSSSVLSS DSMHIGVLAA AAHAAANNSP FTVFYNPRAS PSEFVIPLAK  180
YYKAACSNQL SLGMRFRMMF ETEESGTRRY MGTITGINDL DGVRWKNSQW RNIQVGWDES  240
TAGERRNRVS IWEIEPVTAP FFICPTPFYG LNRQRYPGIP DGESADLDNF FKRTMPWVGE  300
DMSMKDTGLS LVQWMNMQQS SIQSNHLNPL AAPVLQNYGG PDMSRILPHD SLQFNSLRST  360
AQLDQLKNQL VPSTVNPLAS MMQPLQQLAS PSLQTTKQNV VNQSLPQNRV QSHIQPQNAL  420
QQQSSVQNPQ LHRNLPQQMA EVSQSQQKIS LPPEFPDQQQ LQMPENQVQH LQKLHQRQQS  480
LLAHQSAQLQ PQDQQKPLAD QQQMLRNNSQ TNIWFTHLSQ QPKQTDQLLT YGNGLLMGTA  540
ATGGQSGITD DVPSGSTSPS TNNGPIMLPS VIDGRSYRST SMGGEEITQA SAHLMNTSGL  600
ETVSPNIEFF KELQQKSGMK PSDNISESQN KGFIAPQIYL HHVFGTQVGY LDSSSSGTSV  660
CVSQNDVHLQ QQNSNQLSFD SQPLPIQGGE VEDDHIPFGT NNENHLGMIP DPLITKRMMG  720
CGKDFQNNQP DVSSQSFGVP DMSFNSIDST INGGSLLNSG VWAPVPAQPQ PFQRMRTYTK  780
VYKRGAVGRS IDITAYSGYK ELKQDLARRF GIEGQLEDRQ RIGWKLVYVD HENDVLLVGD  840
DPWEEFVSCV CYIKILSPQE VQQMSLDGDF GHPNQPCTSS DL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-156ARF family protein