PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024967878.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 407aa MW: 44237.4 Da PI: 8.3209

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024967878.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.9	2.9e-12	53	78	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C +++rtG C yGd+C+F+H+ XP_024967878.1 53 PGEPNCIYYLRTGVCGYGDNCRFNHP 78 5789*********************9 PP
2	zf-CCCH	35.7	1.5e-11	97	121	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tG CkyG++Ck++H++ XP_024967878.1 97 EPDCVYFLKTGACKYGSTCKYNHPR 121 789********************96 PP
3	zf-CCCH	31.9	2.2e-10	142	166	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++ rtG Ck+G +CkF+H++ XP_024967878.1 142 QKSCPHYVRTGSCKFGVTCKFHHPQ 166 567********************97 PP
4	zf-CCCH	36.6	7.8e-12	253	279	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Cr+f+ tG CkyG Ck++H++ XP_024967878.1 253 PGEPECRYFMNTGACKYGTDCKYHHPR 279 5799*********************96 PP
5	zf-CCCH	27.5	5.6e-09	299	324	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+++ +G+CkyG+ Ck+ H+ XP_024967878.1 299 PGQPACSYYGLYGICKYGPACKYDHP 324 57899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MPDNRRVQRN SGVSNSSLNP SGNNNIEEAI RRLRIQTNGK EDEIGSTAYP ARPGEPNCIY 60 YLRTGVCGYG DNCRFNHPTY NGQMNQHGGD LPERIGEPDC VYFLKTGACK YGSTCKYNHP 120 RDRRGAEPIV LNMVGLPMRQ GQKSCPHYVR TGSCKFGVTC KFHHPQPAPD GSNTPVSGSL 180 TYGPSGAPPH INGSAWSYPS PQTYMPMVIP PAGINQGWSP YIANLNPLLS TNGSGSIDQL 240 YPSTPNSHLP ERPGEPECRY FMNTGACKYG TDCKYHHPRE KMAQPAASSL SPLGLPLRPG 300 QPACSYYGLY GICKYGPACK YDHPLVIYSY SYTMGMPTLP MPDPSFFPYG GMISPTPHSS 360 DSSPSKSSKN AGGWRSEPMS NGKPCTDDSL PEHGGSSSRS SSQNQSD

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MPDNRRVQRN SGVSNSSLNP SGNNNIEEAI RRLRIQTNGK EDEIGSTAYP ARPGEPNCIY  60
YLRTGVCGYG DNCRFNHPTY NGQMNQHGGD LPERIGEPDC VYFLKTGACK YGSTCKYNHP  120
RDRRGAEPIV LNMVGLPMRQ GQKSCPHYVR TGSCKFGVTC KFHHPQPAPD GSNTPVSGSL  180
TYGPSGAPPH INGSAWSYPS PQTYMPMVIP PAGINQGWSP YIANLNPLLS TNGSGSIDQL  240
YPSTPNSHLP ERPGEPECRY FMNTGACKYG TDCKYHHPRE KMAQPAASSL SPLGLPLRPG  300
QPACSYYGLY GICKYGPACK YDHPLVIYSY SYTMGMPTLP MPDPSFFPYG GMISPTPHSS  360
DSSPSKSSKN AGGWRSEPMS NGKPCTDDSL PEHGGSSSRS SSQNQSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	3e-87	C3H family protein