PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024967885.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 223aa    MW: 24428 Da    PI: 7.9132
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024967885.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019132154123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C++sF++   L  H r+H
  XP_024967885.1 132 HECSICHRSFPTGQALGGHKRRH 154
                     78*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MEDHLHPVQD SNWNKGKRSK RPRSTTTDDD VDTTLDLPPT EEEYLAFCLM LLASGNPATT  60
LPPPHHNNNN TNTNTYKCSV CNKGFGSYQA LGGHKASHRK NSINAGSDDQ HPSTSSATFS  120
TSSVLKPTGR AHECSICHRS FPTGQALGGH KRRHYDGNNP TTSANSSTPT HPRDFDLNLP  180
AFPEFQLGLS VECSGKKSQL SMKEQEVESP LPMKKPRLSI MAD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-39C2H2 family protein