PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024968023.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 233aa    MW: 26554.2 Da    PI: 4.8259
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024968023.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.9e-144487755
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                      Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++Lq
  XP_024968023.1 44 VSERNRRKKLNDRLFALRAVVPNiS------KMDKASIIKDAIDYIQMLQ 87
                    57*********************66......******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MEAYWESFLQ ADDCSWGILE ETFSGYYSSS PDGPQSSATS KNIVSERNRR KKLNDRLFAL  60
RAVVPNISKM DKASIIKDAI DYIQMLQDQE RTIQAELMEL ESRKLELESL DFCHETEFLS  120
MERSKKKKLE QAFDSSGSRT YPIQVIQLSV SYVGEKTVLV SLKCSKRRDT IVKLCEVFES  180
LKLKIVTANI SSFSESLFNT LFVQADEKET DILRVQIEAA ISALNDPQSP MSM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128ERSKKKK
2162168LKCSKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.16e-75bHLH family protein