PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968035.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 242aa MW: 27120.4 Da PI: 7.1165

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968035.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.6	2.9e-18	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+ eEdell ++v ++G ++W++I++ ++ gR++k+c++rw + XP_024968035.1 12 KGPWSSEEDELLGKLVDRHGARNWTLISKSIP-GRSGKSCRLRWCNQ 57 79****************************.*********985 PP
2	Myb_DNA-binding	50.5	4.8e-16	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed+ + +a++++G++ W+tIar ++ gRt++ +k++w++ XP_024968035.1 66 SFTETEDKVIMEAHARFGNK-WATIARLLN-GRTDNAVKNHWNST 108 69****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MDSSRSDLDR IKGPWSSEED ELLGKLVDRH GARNWTLISK SIPGRSGKSC RLRWCNQLSP 60 EVEHRSFTET EDKVIMEAHA RFGNKWATIA RLLNGRTDNA VKNHWNSTLK RKCTAMDVGE 120 GGERETRVPR RSESGGVDVT MTMPSSPSGS DVCDSGNNIP FLSMVKNHTT SHRFQPKIET 180 APSTTLTLSL PGTSSYPYDQ QANAKEANAT PFGAEILSVM QEMIRKEVRK YMEDEEESLM 240 QV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	8e-74	MYB family protein