PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968047.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 180aa MW: 19567.1 Da PI: 8.1592

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968047.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.6	1.4e-45	20	119	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C++dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+a+la XP_024968047.1 20 PCAACKLLRRRCSQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHHRGDAVSSMVYEANARIRDPVYGCVGAISSLQQQIDVLQAQLA 114 7*********************************************************************************************9 PP DUF260 96 llkee 100 + ++e XP_024968047.1 115 VSQAE 119 98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence
MKDSGSSGGG AGRKQGAASP CAACKLLRRR CSQDCVFAPY FPADEPQKFA SVHKVFGASN 60 VNKMLQELPE HHRGDAVSSM VYEANARIRD PVYGCVGAIS SLQQQIDVLQ AQLAVSQAEV 120 VHMRMRQFSS SPVNQSPENI SPPSRHHPSH TPTRSLFGMD MVVDHQSHMG MGESLWSSCN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-64	LBD family protein