PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024968070.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 724aa    MW: 81945.8 Da    PI: 5.2875
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024968070.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3497.5e-1073517212373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lLl+cA+ v+++d   a++ L++++++asp+g++ qRla++f+ +L+arl++++s+ly++ ++ + s    +e+l+a++++  ++P+      
  XP_024968070.1 351 KTLLLNCAQSVAADDYMIANEQLKQIRHHASPSGNASQRLAHMFALGLEARLSGTGSQLYASQKVMRVS---AAEKLKAFQAYMSACPFKSNELY 442
                     579*********************************************************888777777...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN++I+e + +++++Hi+Df+i++G+QWp L++ La+Rp+gpp++RiTgv+ p+sg   +e++eetg++La+++e+++v+fe++ ++a+++e++
  XP_024968070.1 443 FANRTIYETALTSSTLHIVDFGIGYGFQWPILIKHLANRPGGPPKVRITGVDLPQSGfrPAERVEETGRQLANYCERFKVSFEYESIAAQNWEMI 537
                     ********************************************************9************************************** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++e+L+++++E laVn   + ++llde+v  +s+rd vLkl+++++P+++v++  +  ++++ F++rf eal +ys+lfd+l+a+l r++e+r++
  XP_024968070.1 538 KIEDLKLQRNEFLAVNALGRFENLLDETVVANSPRDGVLKLIRDMKPDIFVHSVVNGCYSAPFFVTRFREALFHYSSLFDMLDATLDRKKEQRQN 632
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      E+++ gre++nv+aceg er+er et+++W+ r  +aGFkp +l+ + ++q+k  ++  + + +  +e+ +++v+gWk+r L+++S+W
  XP_024968070.1 633 FEKAFYGREAMNVIACEGPERVERPETYKQWQVRNLRAGFKPRRLDRELVSQVKGKVKAGYHKDFVFDEDGKWIVQGWKGRILYAISCW 721
                     **********************************************************999888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    
MVMESRFHGF SDYTNGFALD DENILPTFDH SPSLATGYRF RDEPLDLSFL DLPSPAPNHD  60
PVTLNAFPGM PPQVHSTDEF ADCVSRYLNE FLVEEDMESK QSTFHNPFTL QTSPLNFGPN  120
VESPEEVLYG SSSEYSTYSS TSGSNFTDPR WLGSSDSFET KSSVTQTHSR EYPSFGYTTR  180
LTNDVNDTMD SFINTQMAQN IFTNSESILQ FKRGMEEASK FLPPSKPLFI DLGKFDLPSD  240
STDASLEVAV KVEKVEMDNS SIGFRGRKHH HLEDNDYEDE RSSKQSAVYE EEAELSEMFD  300
RILLCTNAKG EPMPGCGDPP NHLSNNLRHV YSGWNAPSWG PAITSDSVDV KTLLLNCAQS  360
VAADDYMIAN EQLKQIRHHA SPSGNASQRL AHMFALGLEA RLSGTGSQLY ASQKVMRVSA  420
AEKLKAFQAY MSACPFKSNE LYFANRTIYE TALTSSTLHI VDFGIGYGFQ WPILIKHLAN  480
RPGGPPKVRI TGVDLPQSGF RPAERVEETG RQLANYCERF KVSFEYESIA AQNWEMIKIE  540
DLKLQRNEFL AVNALGRFEN LLDETVVANS PRDGVLKLIR DMKPDIFVHS VVNGCYSAPF  600
FVTRFREALF HYSSLFDMLD ATLDRKKEQR QNFEKAFYGR EAMNVIACEG PERVERPETY  660
KQWQVRNLRA GFKPRRLDRE LVSQVKGKVK AGYHKDFVFD EDGKWIVQGW KGRILYAISC  720
WVPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein