PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968137.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 441aa MW: 48633.2 Da PI: 6.8295

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968137.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.1	1.1e-30	218	276	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ XP_024968137.1 218 TDGCQWRKYGQKLAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDQTILITTYEGTHNHP 276 7*********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MEARCENMVL NSFDGHKFPL TTTTIHENGS SIINEMDFFS NSNNDNNNNN NPLMSIHVKE 60 EKEYDQQLQL NLNVGSTSTT SNNGGSPHTD NQTGHKLAIL REDLAKMKRE NEGLRSMLAQ 120 VNEKYVFLHR IIQEKMVTRE TIDEMKSIMT KDDTKQSLLV PLEFKNLNQT IKIDPNVDTN 180 KNGEFDSPKD GDRGGAVEAT IRRARVSVRA RSQASMITDG CQWRKYGQKL AKGNPCPRAY 240 YRCTMAVGCP VRKQVQRCAE DQTILITTYE GTHNHPLPQS AMAMASTTSA AASMLLSGSI 300 SSSDHHHHNL ISPGSMLSSP NLTTTLSATA PFPTITLDLT SDHHDLRQPS PFHFPFSTNM 360 NCNIDQNSNI PMATGQLAAA QQYNNNATKF SGVQRSDQQL MDAATAAVTS DPQFMAALAA 420 AIGSIIGHGN DNNNDNNFNR N

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MEARCENMVL NSFDGHKFPL TTTTIHENGS SIINEMDFFS NSNNDNNNNN NPLMSIHVKE  60
EKEYDQQLQL NLNVGSTSTT SNNGGSPHTD NQTGHKLAIL REDLAKMKRE NEGLRSMLAQ  120
VNEKYVFLHR IIQEKMVTRE TIDEMKSIMT KDDTKQSLLV PLEFKNLNQT IKIDPNVDTN  180
KNGEFDSPKD GDRGGAVEAT IRRARVSVRA RSQASMITDG CQWRKYGQKL AKGNPCPRAY  240
YRCTMAVGCP VRKQVQRCAE DQTILITTYE GTHNHPLPQS AMAMASTTSA AASMLLSGSI  300
SSSDHHHHNL ISPGSMLSSP NLTTTLSATA PFPTITLDLT SDHHDLRQPS PFHFPFSTNM  360
NCNIDQNSNI PMATGQLAAA QQYNNNATKF SGVQRSDQQL MDAATAAVTS DPQFMAALAA  420
AIGSIIGHGN DNNNDNNFNR N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04450.1	5e-51	WRKY family protein