PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968179.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 356aa MW: 39884.1 Da PI: 10.3158

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968179.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.3	2.4e-31	290	347	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ed +++++tYegeHnh+ XP_024968179.1 290 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDSTMLIVTYEGEHNHP 347 9**********************9988**************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MEEVEAANKA AVESCHRILS LLAQPQDQVQ SKNLKIQTGE AVVRFKKVVS LLDNGLGHAR 60 VRKVKKFSTH IPQNLLIDNP TRIIPRTDHQ NPPKPLQLLL EAHPIQEIGP NAVKNNTLSL 120 GNHQPSLELS SNGKCSIQLS QNTPHHHPSS NYHFLQQQQQ QQQKYQQHVQ LKQPQAEMMY 180 RRSNSGINLN FDSSTCTPTI SSNRSFMSSL SIEGSVANLD GSSFRLIGSS RSADQATYQH 240 KRRCSARGDD GSVKCGSSGR CHCSKKRKHR IKRSIKVPAI SNKLADIPPD EYSWRKYGQK 300 PIKGSPHPRG YYKCSSMRGC PARKHVERCL EDSTMLIVTY EGEHNHPRLP SQSANA

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MEEVEAANKA AVESCHRILS LLAQPQDQVQ SKNLKIQTGE AVVRFKKVVS LLDNGLGHAR  60
VRKVKKFSTH IPQNLLIDNP TRIIPRTDHQ NPPKPLQLLL EAHPIQEIGP NAVKNNTLSL  120
GNHQPSLELS SNGKCSIQLS QNTPHHHPSS NYHFLQQQQQ QQQKYQQHVQ LKQPQAEMMY  180
RRSNSGINLN FDSSTCTPTI SSNRSFMSSL SIEGSVANLD GSSFRLIGSS RSADQATYQH  240
KRRCSARGDD GSVKCGSSGR CHCSKKRKHR IKRSIKVPAI SNKLADIPPD EYSWRKYGQK  300
PIKGSPHPRG YYKCSSMRGC PARKHVERCL EDSTMLIVTY EGEHNHPRLP SQSANA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	3e-97	WRKY family protein