PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968214.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 354aa MW: 38194.6 Da PI: 5.7564

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968214.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	9.6e-18	50	95	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd l ++v ++G ++W++Iar ++ gR++k+c++rw + XP_024968214.1 50 RGPWSPEEDVVLSELVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 95 89****************************.*********985 PP
2	Myb_DNA-binding	54	3.8e-17	102	146	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+ Ed +++da++ +G++ W++Ia+ + gRt++ +k++w++ XP_024968214.1 102 RKPFTEAEDRIIIDAHAIHGNK-WASIAKLLR-GRTDNAIKNHWNST 146 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MNEETGHSLD PTISAAVSTG HDDGGGEVDA VMAEVGGGGG GGADKKSKVR GPWSPEEDVV 60 LSELVSKFGA RNWSLIARGI PGRSGKSCRL RWCNQLDPAV ERKPFTEAED RIIIDAHAIH 120 GNKWASIAKL LRGRTDNAIK NHWNSTLRRR CIQPNAYMCV SSTKMEIENN HFDGPKTTSE 180 DTLSNGNMNQ VKAPEYEDGS AMEAEDIPSA DQNEHVPETL PHPTPHYGAF TVYTPPNGRI 240 QNGQLRSVVP REGPLIQASK PESMGFKFLK GYCSECVTPS RCGHGCCSGP ENNAASHSLL 300 GPEFVEYEEL SPLASQELAA IATDLNAIAW IKSGLENPGA SQRQTPHISL PTFA

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MNEETGHSLD PTISAAVSTG HDDGGGEVDA VMAEVGGGGG GGADKKSKVR GPWSPEEDVV  60
LSELVSKFGA RNWSLIARGI PGRSGKSCRL RWCNQLDPAV ERKPFTEAED RIIIDAHAIH  120
GNKWASIAKL LRGRTDNAIK NHWNSTLRRR CIQPNAYMCV SSTKMEIENN HFDGPKTTSE  180
DTLSNGNMNQ VKAPEYEDGS AMEAEDIPSA DQNEHVPETL PHPTPHYGAF TVYTPPNGRI  240
QNGQLRSVVP REGPLIQASK PESMGFKFLK GYCSECVTPS RCGHGCCSGP ENNAASHSLL  300
GPEFVEYEEL SPLASQELAA IATDLNAIAW IKSGLENPGA SQRQTPHISL PTFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	1e-101	MYB family protein