PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024968289.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 27035 Da    PI: 10.3817
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024968289.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.74.8e-261059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien + rqvtfskR ng+lKKA+EL +LCdaev ++ifs+tg+l+ey+s
  XP_024968289.1 10 RIENPTSRQVTFSKRSNGLLKKAKELAILCDAEVGLVIFSNTGRLHEYAS 59
                    8***********************************************86 PP
2K-box80.63.7e-27821701098
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +a+ + +q e+a+++++++ Lq+++R+l Ge+L+ L++k+Lq+Le+qLe+slk++R  K+++++e+i+el +k + + +enk+L+kk+
  XP_024968289.1  82 PTADVKFWQGEAARMRQQLQYLQQSHRQLFGEELSGLNVKDLQKLENQLETSLKNVRINKEHIFTEEIKELHRKGNHIVQENKELQKKV 170
                     567789*********************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MGRGKIPIRR IENPTSRQVT FSKRSNGLLK KAKELAILCD AEVGLVIFSN TGRLHEYASS  60
SMTKVTERYN KVKEECRQLV NPTADVKFWQ GEAARMRQQL QYLQQSHRQL FGEELSGLNV  120
KDLQKLENQL ETSLKNVRIN KEHIFTEEIK ELHRKGNHIV QENKELQKKV TLLHQEKSDL  180
QKKIYRLWTM DEANRNSNAS YSLRINDLNA LQLSQPQPQK KDIPADTMKL RL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.14e-73MIKC_MADS family protein