PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968304.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 464aa MW: 51316.9 Da PI: 8.816

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968304.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_024968304.1 63 FMCEICNKGFQRDQNLQLHRRGH 85 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MMSGDGFSSP PPSLTALVHD PVTKPNPNSA NSAKRKRSLP GTPDPDAEVI ALSPKSLMAT 60 NRFMCEICNK GFQRDQNLQL HRRGHNLPWK LKQRNKQEVV RKKVYICPEK SCVHHDPSRA 120 LGDLTGVKKH FSRKHGEKKW KCEKCSKKYA VLSDWKAHSK ICGTREYKCD CGTLFSRKDS 180 FVTHRAFCDA ISEEHSGMAS FPMVQTTTNL NFQRDLMMMN GGDRIGNPRL PAIFCGGGEL 240 AKSPDGNEMK PRLPIWLHHH ANNPLDNSTT NSLFLGSSSS NDNNGGILSS EMVQWLSRSQ 300 EAVQTFTELP QGLSLEEEEN NKEEMQLNSL YNYGGCPNYP PPPPPHLSAT ALLQKASQIG 360 STRSTNSGGF GFMSTTKLSE LTSLNQTRNN GGSQAENLRG EMMNGDGLTM MMMAGLNKKT 420 GEGNLTRDFL GVEGYERRAF SLQQELIKFT CSNNDSSIGF SGSQ

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MMSGDGFSSP PPSLTALVHD PVTKPNPNSA NSAKRKRSLP GTPDPDAEVI ALSPKSLMAT  60
NRFMCEICNK GFQRDQNLQL HRRGHNLPWK LKQRNKQEVV RKKVYICPEK SCVHHDPSRA  120
LGDLTGVKKH FSRKHGEKKW KCEKCSKKYA VLSDWKAHSK ICGTREYKCD CGTLFSRKDS  180
FVTHRAFCDA ISEEHSGMAS FPMVQTTTNL NFQRDLMMMN GGDRIGNPRL PAIFCGGGEL  240
AKSPDGNEMK PRLPIWLHHH ANNPLDNSTT NSLFLGSSSS NDNNGGILSS EMVQWLSRSQ  300
EAVQTFTELP QGLSLEEEEN NKEEMQLNSL YNYGGCPNYP PPPPPHLSAT ALLQKASQIG  360
STRSTNSGGF GFMSTTKLSE LTSLNQTRNN GGSQAENLRG EMMNGDGLTM MMMAGLNKKT  420
GEGNLTRDFL GVEGYERRAF SLQQELIKFT CSNNDSSIGF SGSQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	103	KLKQRNKQEVVRKK
2	92	105	KLKQRNKQEVVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-102	C2H2 family protein