PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968312.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 462aa MW: 51104.7 Da PI: 8.932

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968312.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_024968312.1 61 FMCEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MMSGDGFSSP PPSLTALVHD PVTKPNPNSA NSAKRKRSLP GTPDAEVIAL SPKSLMATNR 60 FMCEICNKGF QRDQNLQLHR RGHNLPWKLK QRNKQEVVRK KVYICPEKSC VHHDPSRALG 120 DLTGVKKHFS RKHGEKKWKC EKCSKKYAVL SDWKAHSKIC GTREYKCDCG TLFSRKDSFV 180 THRAFCDAIS EEHSGMASFP MVQTTTNLNF QRDLMMMNGG DRIGNPRLPA IFCGGGELAK 240 SPDGNEMKPR LPIWLHHHAN NPLDNSTTNS LFLGSSSSND NNGGILSSEM VQWLSRSQEA 300 VQTFTELPQG LSLEEEENNK EEMQLNSLYN YGGCPNYPPP PPPHLSATAL LQKASQIGST 360 RSTNSGGFGF MSTTKLSELT SLNQTRNNGG SQAENLRGEM MNGDGLTMMM MAGLNKKTGE 420 GNLTRDFLGV EGYERRAFSL QQELIKFTCS NNDSSIGFSG SQ

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MMSGDGFSSP PPSLTALVHD PVTKPNPNSA NSAKRKRSLP GTPDAEVIAL SPKSLMATNR  60
FMCEICNKGF QRDQNLQLHR RGHNLPWKLK QRNKQEVVRK KVYICPEKSC VHHDPSRALG  120
DLTGVKKHFS RKHGEKKWKC EKCSKKYAVL SDWKAHSKIC GTREYKCDCG TLFSRKDSFV  180
THRAFCDAIS EEHSGMASFP MVQTTTNLNF QRDLMMMNGG DRIGNPRLPA IFCGGGELAK  240
SPDGNEMKPR LPIWLHHHAN NPLDNSTTNS LFLGSSSSND NNGGILSSEM VQWLSRSQEA  300
VQTFTELPQG LSLEEEENNK EEMQLNSLYN YGGCPNYPPP PPPHLSATAL LQKASQIGST  360
RSTNSGGFGF MSTTKLSELT SLNQTRNNGG SQAENLRGEM MNGDGLTMMM MAGLNKKTGE  420
GNLTRDFLGV EGYERRAFSL QQELIKFTCS NNDSSIGFSG SQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	101	KLKQRNKQEVVRKK
2	90	103	KLKQRNKQEVVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	5e-98	C2H2 family protein