PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968319.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 460aa MW: 50918.6 Da PI: 9.0523

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968319.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_024968319.1 59 FMCEICNKGFQRDQNLQLHRRGH 81 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MMSGDGFSSP PPSLTALVHD PVTKPNPNSA NSAKRKRSLP GTPEVIALSP KSLMATNRFM 60 CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NKQEVVRKKV YICPEKSCVH HDPSRALGDL 120 TGVKKHFSRK HGEKKWKCEK CSKKYAVLSD WKAHSKICGT REYKCDCGTL FSRKDSFVTH 180 RAFCDAISEE HSGMASFPMV QTTTNLNFQR DLMMMNGGDR IGNPRLPAIF CGGGELAKSP 240 DGNEMKPRLP IWLHHHANNP LDNSTTNSLF LGSSSSNDNN GGILSSEMVQ WLSRSQEAVQ 300 TFTELPQGLS LEEEENNKEE MQLNSLYNYG GCPNYPPPPP PHLSATALLQ KASQIGSTRS 360 TNSGGFGFMS TTKLSELTSL NQTRNNGGSQ AENLRGEMMN GDGLTMMMMA GLNKKTGEGN 420 LTRDFLGVEG YERRAFSLQQ ELIKFTCSNN DSSIGFSGSQ

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MMSGDGFSSP PPSLTALVHD PVTKPNPNSA NSAKRKRSLP GTPEVIALSP KSLMATNRFM  60
CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NKQEVVRKKV YICPEKSCVH HDPSRALGDL  120
TGVKKHFSRK HGEKKWKCEK CSKKYAVLSD WKAHSKICGT REYKCDCGTL FSRKDSFVTH  180
RAFCDAISEE HSGMASFPMV QTTTNLNFQR DLMMMNGGDR IGNPRLPAIF CGGGELAKSP  240
DGNEMKPRLP IWLHHHANNP LDNSTTNSLF LGSSSSNDNN GGILSSEMVQ WLSRSQEAVQ  300
TFTELPQGLS LEEEENNKEE MQLNSLYNYG GCPNYPPPPP PHLSATALLQ KASQIGSTRS  360
TNSGGFGFMS TTKLSELTSL NQTRNNGGSQ AENLRGEMMN GDGLTMMMMA GLNKKTGEGN  420
LTRDFLGVEG YERRAFSLQQ ELIKFTCSNN DSSIGFSGSQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	99	KLKQRNKQEVVRKK
2	88	101	KLKQRNKQEVVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	4e-96	C2H2 family protein