PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968343.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 522aa MW: 55028.9 Da PI: 8.4263

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968343.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_024968343.1 67 FVCEICNKGFQRDQNLQLHRRGH 89 89*******************88 PP
2	zf-C2H2	12.8	0.00036	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+k + +s+ k H++ + XP_024968343.1 143 WKCDQCSKKYAVQSDWKAHLKIC 165 58******************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MTTELDNTSA VNESTVSGEA SISSLGNQTA APPEKPVKRK RNLAGMPDPD AEVIALSPKT 60 LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS KEIRKRVYVC PEPSCVHHDP 120 SRALGDLTGI KKHFCRKHGE KKWKCDQCSK KYAVQSDWKA HLKICGTREY KCDCGTLFSR 180 RDSFITHRAF CDALAVESAK GQAEDEPSKK DEDPKPLLIE SAPQSTSTAS PPPPPPPASL 240 PPPPPTTTTP AVPVTSSVLC IAKTPDLPEI SKSNNDSRPV LENPSQLVAG LTGSSSGSCS 300 STNTGSTSSS VFASLFASST ASKTLQPQPQ PQTTGYKDLI RSMTQPTQTP DLTLPSSAQE 360 TISLCLSTNQ GSSIFRTAGQ ELRQYAPPPQ PTMSATALLQ KAAQMGASAS GASLLRGYGL 420 DAGQRDDTDG GASIGLGLGV GYDGRSGLEE LMMGTPSVYG PKHTTLDFLG LGMAAGGGTT 480 NGLSALMTSI GGSLDVTAAV SSFGRGGRAG SGEFTGKDMG TQ

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MTTELDNTSA VNESTVSGEA SISSLGNQTA APPEKPVKRK RNLAGMPDPD AEVIALSPKT  60
LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS KEIRKRVYVC PEPSCVHHDP  120
SRALGDLTGI KKHFCRKHGE KKWKCDQCSK KYAVQSDWKA HLKICGTREY KCDCGTLFSR  180
RDSFITHRAF CDALAVESAK GQAEDEPSKK DEDPKPLLIE SAPQSTSTAS PPPPPPPASL  240
PPPPPTTTTP AVPVTSSVLC IAKTPDLPEI SKSNNDSRPV LENPSQLVAG LTGSSSGSCS  300
STNTGSTSSS VFASLFASST ASKTLQPQPQ PQTTGYKDLI RSMTQPTQTP DLTLPSSAQE  360
TISLCLSTNQ GSSIFRTAGQ ELRQYAPPPQ PTMSATALLQ KAAQMGASAS GASLLRGYGL  420
DAGQRDDTDG GASIGLGLGV GYDGRSGLEE LMMGTPSVYG PKHTTLDFLG LGMAAGGGTT  480
NGLSALMTSI GGSLDVTAAV SSFGRGGRAG SGEFTGKDMG TQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-120	C2H2 family protein