PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024968387.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 195aa    MW: 21777.8 Da    PI: 6.506
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024968387.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-191666155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ykGVr +k +grWv+eIr p++   r r++lg+++++e+Aa+a +aa  +l+g
  XP_024968387.1 16 PKYKGVRKRK-WGRWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAALFCLRG 66
                    79*****999.**********933...5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MVKPAAETSS ADHQEPKYKG VRKRKWGRWV SEIRLPNSRE RIWLGSYDSP EKAARAFDAA  60
LFCLRGTTAT FNFPHQPPNI PGGRSLSAAQ IQAAAADYAN SSHSHSHHHH HHQFSESPSG  120
SASHPAAPME AASTSFLLHY DDDNSNNVTD YGIFPGFDDY FMRPPPIVSP RTPYYEDENS  180
CDEDISQGPS FLWSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925KGVRKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.19e-43ERF family protein