PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024968394.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GATA
Protein Properties Length: 181aa    MW: 20417.9 Da    PI: 10.2803
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024968394.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA633.5e-206295134
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                    C+ C+t+kTplWR+gp+g+k+LCnaCG++yrkk+
  XP_024968394.1 62 CVDCKTSKTPLWRSGPSGPKSLCNACGIRYRKKK 95
                    ********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MWLRHHSPPP PFLLLCLSTY SSILIFHITF WFRGSTTSNR KKKKMESMCC GETISKVDEK  60
ICVDCKTSKT PLWRSGPSGP KSLCNACGIR YRKKKSISGS EKKKKKKEKQ PPSSPTSSSS  120
CCSTVGEDDC DLRRIKLVVL LQSQRERCGM KKVRRNDYNK LGEVEQAAFL LMSLSCGSSQ  180
L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192107RKKKSISGSEKKKKKK
293108RKKKSISGSEKKKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.15e-18GATA family protein