PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968440.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 278aa MW: 30327.9 Da PI: 8.2359

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968440.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.5	0.00028	180	212	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++++ L++++ + +K + a++L +A YIk Lq XP_024968440.1 180 ERIAALQQMVSPY-----GKTDTASVLHEAFGYIKFLQ 212 7899999999998.....9******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MPQNEAAAID PLAGGSFSRL LFSDVEVDDA ITDHRHRHRH HQPDNTTAVG SSRRFTFSAD 60 QKPPKMLCFG GDYTNDISAV SLTPQNSSTT TTDDNNNSSS PSSTTNSTTT TSLSSNSNMK 120 RNMIRCDYFQ PVVLPVSFTT TGATTTTTPM TTTRRNYKKT RAENTPPASH AKVKKEKLGE 180 RIAALQQMVS PYGKTDTASV LHEAFGYIKF LQEQVQVLCS PYLQRPASAH IEGEGKKDLG 240 SRGLCLVPVE CTLHVAESNG ADLWSPAMVN RPPLHLAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-42	bHLH family protein