PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024968442.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 190aa    MW: 21878.2 Da    PI: 4.6463
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024968442.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.21.9e-3781281128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeelvv++L++k++  + +  ++i+++++y ++PwdL+ k+ ae k+wy+Fs+r++       +nrat++g+Wk+ g d++++s+
  XP_024968442.1   8 LPPGFRFCPTDEELVVHFLHRKASLLPYHP-DIIPDLGLYPCDPWDLDGKAMAEGKKWYYFSRRSH-------ENRATSNGFWKSCGGDEQIVSS 94 
                     79*************************998.89**************977778899******9976.......68*****************998 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +g+kk  vf+ g+ap+g kt+W+m+e+r+
  XP_024968442.1  95 nGSKRIGVKKYYVFHVGEAPEGIKTNWIMQEFRV 128
                     67778***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MGETNVNLPP GFRFCPTDEE LVVHFLHRKA SLLPYHPDII PDLGLYPCDP WDLDGKAMAE  60
GKKWYYFSRR SHENRATSNG FWKSCGGDEQ IVSSNGSKRI GVKKYYVFHV GEAPEGIKTN  120
WIMQEFRVSD ASTTSSRSRR RDTSKSDWVI CRVYEHDYDN DDDNDDGMEL SCLDEVFLSL  180
DDFDDISFPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.14e-58NAC family protein