PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024968477.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 472aa    MW: 52959.8 Da    PI: 6.7834
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024968477.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS461.55.1e-141484691374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v+sg++e a+ +L ++s+l+sp+gd+mqR+a+yf+eALa+r++++++++ykal++++ s    se++ ++++f+e +P+lk+++
  XP_024968477.1  48 LIHLLLTCAKHVASGNFEHANIALDQISHLSSPEGDTMQRIASYFAEALANRILKTWPGIYKALNSTKIS--FASENILVRRMFFEYFPYLKIAF 140
                     689*************************************************************999998..599******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     ++aNq I ea+ege+ vH++D+++s+++QW aLl+ L++Rpegpp+lRiTgv++    +ke l ++++ L + Ae+l++pf+fn+ +++++e+l+
  XP_024968477.1 141 VIANQVIIEAMEGEKIVHVVDLNASEPTQWRALLRDLSARPEGPPHLRITGVHQ----QKEVLDQMARVLIEEAEKLDIPFQFNP-IVSKIENLD 230
                     ******************************************************....9**************************.7999***** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll......................................................desvsles.erdevLkl 230
                     +e+L+vk+gEala+++vlqlh+ll                                                      ++s s++s ++d +L++
  XP_024968477.1 231 VEKLNVKTGEALAISSVLQLHSLLapddhevakskssltsknsngihfprvlqvnqkplgellekdlangyspsqdtaSSSPSVTStKIDGFLNA 325
                     ***************************************************************************99844444444579****** PP

            GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                     +++lsPkv+vv+eq+++hn++ ++er++e+l++y+alfd+le++lpr+s er kvE++l+g+ei+n++aceg er+erhe+l kW +rl+ aGF+
  XP_024968477.1 326 LRGLSPKVMVVSEQDSNHNKSALMERLSESLYFYAALFDCLESTLPRTSMERLKVEKMLFGEEIKNIIACEGGERKERHEKLDKWVQRLDLAGFG 420
                     *********************************************************************************************** PP

            GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      vpls++a  qa++ll+ ++ dg r++ee+g++v++W+drpL+svSaW+
  XP_024968477.1 421 CVPLSYYALLQARRLLQGYSCDGCRIKEENGCVVMCWQDRPLFSVSAWK 469
                     ************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    
MFQDDGSSSV TSTPVQNQIF PTMSLSPAMG SPYPWLKELK SEERGLCLIH LLLTCAKHVA  60
SGNFEHANIA LDQISHLSSP EGDTMQRIAS YFAEALANRI LKTWPGIYKA LNSTKISFAS  120
ENILVRRMFF EYFPYLKIAF VIANQVIIEA MEGEKIVHVV DLNASEPTQW RALLRDLSAR  180
PEGPPHLRIT GVHQQKEVLD QMARVLIEEA EKLDIPFQFN PIVSKIENLD VEKLNVKTGE  240
ALAISSVLQL HSLLAPDDHE VAKSKSSLTS KNSNGIHFPR VLQVNQKPLG ELLEKDLANG  300
YSPSQDTASS SPSVTSTKID GFLNALRGLS PKVMVVSEQD SNHNKSALME RLSESLYFYA  360
ALFDCLESTL PRTSMERLKV EKMLFGEEIK NIIACEGGER KERHEKLDKW VQRLDLAGFG  420
CVPLSYYALL QARRLLQGYS CDGCRIKEEN GCVVMCWQDR PLFSVSAWKC RR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein