PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968582.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 595aa MW: 66600.1 Da PI: 9.0396

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968582.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.9	9.5e-08	502	551	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_024968582.1 502 RRPFSVSEVEALVEAVEKLGTGRWRDVKLRAFddaKHRTYVDLKDKWKTL 551 678999******************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 595 aa Download sequence
MVLQKRLEYG FNGYQVPPTP RAPRSARKRV KKNEDHNQMY AFDLLATIAG KLLLEGNNSA 60 DNKLSREETV KETTVKTEED SSKANDCDQE SCNKSFFVSE IIPKALVTDT CSGPASGITV 120 SDCSDKVPSA SRSLNGENVG CKIEDINDKQ MTYEAPNNGK PPVVNNLDSN VNLVVRDDDE 180 NSSWCTQPQA LNNKTFRPPS RIGDRRIRRL LASKQWKVAP KLNNGVHFNT DADLKPVSYH 240 SKKTCYKHQR SLRDYPFKKR RLYQLENPSN SDNRSGSPRK GSIEDDSSLG AAEDPAFQAQ 300 DSHGNGKPFD GVINIYSSIS KLIDVFVFNS VKLKIKSFRV PELFIEIPET ATVSSLKRTV 360 MEAVTAIFSG ELHVGVMLQG KRIRDDNKTL LQTGICHDNK LDALGFTLEP NQLQVPPSQC 420 PEDRSVVPPP ATPKPLTRYS PPQSVANQVV IQQEMTNSGK ITESDDDNRS GCDSRALVTV 480 PAIIDNPVSK SKQAEVAQRR IRRPFSVSEV EALVEAVEKL GTGRWRDVKL RAFDDAKHRT 540 YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLEAHA YWSNNQFKTQ TCRLV

Sequence ? help Back to Top

Protein Sequence Length: 595 aa Download sequence

MVLQKRLEYG FNGYQVPPTP RAPRSARKRV KKNEDHNQMY AFDLLATIAG KLLLEGNNSA  60
DNKLSREETV KETTVKTEED SSKANDCDQE SCNKSFFVSE IIPKALVTDT CSGPASGITV  120
SDCSDKVPSA SRSLNGENVG CKIEDINDKQ MTYEAPNNGK PPVVNNLDSN VNLVVRDDDE  180
NSSWCTQPQA LNNKTFRPPS RIGDRRIRRL LASKQWKVAP KLNNGVHFNT DADLKPVSYH  240
SKKTCYKHQR SLRDYPFKKR RLYQLENPSN SDNRSGSPRK GSIEDDSSLG AAEDPAFQAQ  300
DSHGNGKPFD GVINIYSSIS KLIDVFVFNS VKLKIKSFRV PELFIEIPET ATVSSLKRTV  360
MEAVTAIFSG ELHVGVMLQG KRIRDDNKTL LQTGICHDNK LDALGFTLEP NQLQVPPSQC  420
PEDRSVVPPP ATPKPLTRYS PPQSVANQVV IQQEMTNSGK ITESDDDNRS GCDSRALVTV  480
PAIIDNPVSK SKQAEVAQRR IRRPFSVSEV EALVEAVEKL GTGRWRDVKL RAFDDAKHRT  540
YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLEAHA YWSNNQFKTQ TCRLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-134	MYB_related family protein