PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968583.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 568aa MW: 63686.8 Da PI: 9.053

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24	8.9e-08	475	524	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_024968583.1 475 RRPFSVSEVEALVEAVEKLGTGRWRDVKLRAFddaKHRTYVDLKDKWKTL 524 678999******************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence
MVLQKRLEYG FNGYQVPPTP RAPRSARKRV KKNEDHNQMY AFDLLATIAG KLLLEGNNSA 60 DNKLSREETV KETTVKTEED SSKANDCDQE SCNKSFFVSE IIPKALVTDT CSGPASGITV 120 SDCSDKVPSA SRSLNGENVG CKIEDINDKQ MTYEAPNNGK PPVVNNLDSN VNLVVRDDDE 180 NSSWCTQPQA LNNKTFRPPS RIGDRRIRRL LASKQWKVAP KLNNGVHFNT DADLKPVSYH 240 SKKTCYKHQR SLRDYPFKKR RLYQLENPSN SDNRSGSPRK GSIEDDSSLG AAEDPAFQAQ 300 DSHVKLKIKS FRVPELFIEI PETATVSSLK RTVMEAVTAI FSGELHVGVM LQGKRIRDDN 360 KTLLQTGICH DNKLDALGFT LEPNQLQVPP SQCPEDRSVV PPPATPKPLT RYSPPQSVAN 420 QVVIQQEMTN SGKITESDDD NRSGCDSRAL VTVPAIIDNP VSKSKQAEVA QRRIRRPFSV 480 SEVEALVEAV EKLGTGRWRD VKLRAFDDAK HRTYVDLKDK WKTLVHTARI SPQQRRGEPV 540 PQELLDRVLE AHAYWSNNQF KTQTCRLV

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence

MVLQKRLEYG FNGYQVPPTP RAPRSARKRV KKNEDHNQMY AFDLLATIAG KLLLEGNNSA  60
DNKLSREETV KETTVKTEED SSKANDCDQE SCNKSFFVSE IIPKALVTDT CSGPASGITV  120
SDCSDKVPSA SRSLNGENVG CKIEDINDKQ MTYEAPNNGK PPVVNNLDSN VNLVVRDDDE  180
NSSWCTQPQA LNNKTFRPPS RIGDRRIRRL LASKQWKVAP KLNNGVHFNT DADLKPVSYH  240
SKKTCYKHQR SLRDYPFKKR RLYQLENPSN SDNRSGSPRK GSIEDDSSLG AAEDPAFQAQ  300
DSHVKLKIKS FRVPELFIEI PETATVSSLK RTVMEAVTAI FSGELHVGVM LQGKRIRDDN  360
KTLLQTGICH DNKLDALGFT LEPNQLQVPP SQCPEDRSVV PPPATPKPLT RYSPPQSVAN  420
QVVIQQEMTN SGKITESDDD NRSGCDSRAL VTVPAIIDNP VSKSKQAEVA QRRIRRPFSV  480
SEVEALVEAV EKLGTGRWRD VKLRAFDDAK HRTYVDLKDK WKTLVHTARI SPQQRRGEPV  540
PQELLDRVLE AHAYWSNNQF KTQTCRLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-138	MYB_related family protein