PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968584.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 566aa MW: 63500.6 Da PI: 9.1685

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968584.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24	8.9e-08	473	522	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_024968584.1 473 RRPFSVSEVEALVEAVEKLGTGRWRDVKLRAFddaKHRTYVDLKDKWKTL 522 678999******************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence
MVLQKRLEYG FNGYQVPPTP RAPRSARKRV KKNEDHNQMY AFDLLATIAG KLLLEGNNSA 60 DNKLSREETV KETTVKTEED SSKANDCDQE SCNKSFFVSE IIPKALVTDT CSGPASGITV 120 SDCSDKVPSA SRSLNGENVG CKIEDINDKQ MTYEAPNNGK PPVVNNLDSN VNLVVRDDDE 180 NSSWCTQPQA LNNKTFRPPS RIGDRRIRRL LASKQWKVAP KLNNGVHFNT DLKPVSYHSK 240 KTCYKHQRSL RDYPFKKRRL YQLENPSNSD NRSGSPRKGS IEDDSSLGAA EDPAFQAQDS 300 HVKLKIKSFR VPELFIEIPE TATVSSLKRT VMEAVTAIFS GELHVGVMLQ GKRIRDDNKT 360 LLQTGICHDN KLDALGFTLE PNQLQVPPSQ CPEDRSVVPP PATPKPLTRY SPPQSVANQV 420 VIQQEMTNSG KITESDDDNR SGCDSRALVT VPAIIDNPVS KSKQAEVAQR RIRRPFSVSE 480 VEALVEAVEK LGTGRWRDVK LRAFDDAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ 540 ELLDRVLEAH AYWSNNQFKT QTCRLV

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence

MVLQKRLEYG FNGYQVPPTP RAPRSARKRV KKNEDHNQMY AFDLLATIAG KLLLEGNNSA  60
DNKLSREETV KETTVKTEED SSKANDCDQE SCNKSFFVSE IIPKALVTDT CSGPASGITV  120
SDCSDKVPSA SRSLNGENVG CKIEDINDKQ MTYEAPNNGK PPVVNNLDSN VNLVVRDDDE  180
NSSWCTQPQA LNNKTFRPPS RIGDRRIRRL LASKQWKVAP KLNNGVHFNT DLKPVSYHSK  240
KTCYKHQRSL RDYPFKKRRL YQLENPSNSD NRSGSPRKGS IEDDSSLGAA EDPAFQAQDS  300
HVKLKIKSFR VPELFIEIPE TATVSSLKRT VMEAVTAIFS GELHVGVMLQ GKRIRDDNKT  360
LLQTGICHDN KLDALGFTLE PNQLQVPPSQ CPEDRSVVPP PATPKPLTRY SPPQSVANQV  420
VIQQEMTNSG KITESDDDNR SGCDSRALVT VPAIIDNPVS KSKQAEVAQR RIRRPFSVSE  480
VEALVEAVEK LGTGRWRDVK LRAFDDAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ  540
ELLDRVLEAH AYWSNNQFKT QTCRLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-136	MYB_related family protein