PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024968649.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 254aa    MW: 28399.7 Da    PI: 5.6805
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024968649.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.71.1e-2195145155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +grW+AeIrdp     +  kr++lg+++t+eeAa  +++a++kl+g
  XP_024968649.1  95 KKFRGVRRRP-WGRWAAEIRDP-----HrrKRVWLGTYDTPEEAATVYDEAALKLKG 145
                     59********.**********6.....226*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MEFDRTISIG SAVRFSEHVV TTSKFVHGET PATSIKQRIV RITLTDPYAT DSSGDEEVPV  60
VKRVKKHVSV IDFSTPSSSF AKQEQRKRSA GSMEKKFRGV RRRPWGRWAA EIRDPHRRKR  120
VWLGTYDTPE EAATVYDEAA LKLKGPAAVT NFPRVTVTRT VTVESQSQTA TTTSSSCSEE  180
PLNHTAMSPT SVLYGNPELT AFDHGLGCCD VDSLGFDIDM PFNLPDFVAS ENYCGEELGE  240
FNIDDFLVDF RENY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101120RRRPWGRWAAEIRDPHRRKR
2117144RRKRVWLGTYDTPEEAATVYDEAALKLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.17e-36ERF family protein