PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968698.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 479aa MW: 52954.6 Da PI: 8.6715

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968698.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_024968698.1 96 FVCEICNKGFQRDQNLQLHRRGH 118 89*******************88 PP
2	zf-C2H2	11.6	0.00085	173	195	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_024968698.1 173 WKCDKCSKIYAVQSDWKAHSKTC 195 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MMFSASVYST TSNKNSTSLS EEAATSTVSS VITSKIPHEF TPSMTLSSIS NLAHQEHDLY 60 PNHQKIKKKR NLPGNPDPDA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL 120 PWKLKQRNNK DEMKKRAYVC PEPSCVHHHP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK 180 IYAVQSDWKA HSKTCGTREY RCDCGTLFSR KDSFITHRAF CDALAEETAR LSAAAAAAAA 240 AVSITNNHHP SITNNVTQTP FNIQQNIQNP SSSLFPFTPT LNATWVPTQT LNPTRIKPET 300 IHHQHLLPAI TTPFYQEPNK EQLRMITSPP ATTFHGLHVS TSRDHVPAAH HLSATALLQK 360 AATVGAVGDH VGSTMSRLDM GELVQVTTTA AVISPEYHQH MGLTSGNIAT WQKTDRLTRD 420 FLGLTGDQED DHHHHGGGAD VNVSVNMRNM LTYTGGIEIP THGFGFAEPT TASEAWGNC

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MMFSASVYST TSNKNSTSLS EEAATSTVSS VITSKIPHEF TPSMTLSSIS NLAHQEHDLY  60
PNHQKIKKKR NLPGNPDPDA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL  120
PWKLKQRNNK DEMKKRAYVC PEPSCVHHHP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK  180
IYAVQSDWKA HSKTCGTREY RCDCGTLFSR KDSFITHRAF CDALAEETAR LSAAAAAAAA  240
AVSITNNHHP SITNNVTQTP FNIQQNIQNP SSSLFPFTPT LNATWVPTQT LNPTRIKPET  300
IHHQHLLPAI TTPFYQEPNK EQLRMITSPP ATTFHGLHVS TSRDHVPAAH HLSATALLQK  360
AATVGAVGDH VGSTMSRLDM GELVQVTTTA AVISPEYHQH MGLTSGNIAT WQKTDRLTRD  420
FLGLTGDQED DHHHHGGGAD VNVSVNMRNM LTYTGGIEIP THGFGFAEPT TASEAWGNC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-119	C2H2 family protein