PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968727.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Nin-like

Protein Properties

Length: 840aa MW: 94089.9 Da PI: 5.9872

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968727.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.9	1.1e-29	545	595	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i+le+l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ XP_024968727.1 545 EKTITLEMLRQYFAGSLKDAAKNLGVCPTTLKRICRQHGIQRWPSRKIKKV 595 79***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 840 aa Download sequence
MDDSLFSPNN IFGNPSELMM DFDYVDELLF DGCWLQATDG SEFINNNNPL FDPSYQWPTL 60 EFNNGDQLPE DVQEERQRSS FLTNLSVSQT EEGNPSKSHI SNSIGFYNQS ESSDTSRRWW 120 IPPMATIGRH SLSVKERLIH AIDSIKDSTM HKNVLIQIWL PENREGKKVL STSHQLSSLD 180 SGCPQLSNYR NISENYHFAA EGDSKEVGLP GRVYMGKVPE WTPDVRFFKT EEYPRVEYAQ 240 QLDVRGSVAV PIFDHDRQSC LGVIEVVMTT QKSNYAPEIE RVCKALEAVN LWSSEPLKSQ 300 KFEVGDGLNQ AALPEILEIL KSACETHNLP LAQTWVPCIQ QGKGGCRHSA ANVIHCISTV 360 DSACYVNDPA FKDFQEACSE HHLLKGQGVV GQAFTTNQPC YFPDIASYRK TDYPLSHHAR 420 IFNLCGVVAI RLRSTFTENI DYVLEFFLPV DCKEPEEQKA LLNSLSIIIQ NVCRSLRIVT 480 DKELVEEGSV VSGIEAVKVE EISQETPVDL IGTQVRESGS GDGVFGNDGG NKRPPERRRG 540 GAKTEKTITL EMLRQYFAGS LKDAAKNLGV CPTTLKRICR QHGIQRWPSR KIKKVGHSLQ 600 KIQLVMDSVH GASGSFQIES FYSNFPKLAS SDPKTSSFSA SKFHNVDSKP IEGLVKSSLS 660 PSCSQTSSSG QSCSSGTHPY PHPRTPTAED SGNCGLKRAR SDAELHVSLY SEDQEQKVLQ 720 RSHSHKSLTE LPITPKLPPK GEHVQRVKVT YGEEKIRFRL QKDWGYGHLL QEIAKRFCIN 780 DMNEYHLKYF DDDSEWVLLT CDADLEECID VYRLCQNATI KLALFEPQLV AGSLGSTVVL

Sequence ? help Back to Top

Protein Sequence Length: 840 aa Download sequence

MDDSLFSPNN IFGNPSELMM DFDYVDELLF DGCWLQATDG SEFINNNNPL FDPSYQWPTL  60
EFNNGDQLPE DVQEERQRSS FLTNLSVSQT EEGNPSKSHI SNSIGFYNQS ESSDTSRRWW  120
IPPMATIGRH SLSVKERLIH AIDSIKDSTM HKNVLIQIWL PENREGKKVL STSHQLSSLD  180
SGCPQLSNYR NISENYHFAA EGDSKEVGLP GRVYMGKVPE WTPDVRFFKT EEYPRVEYAQ  240
QLDVRGSVAV PIFDHDRQSC LGVIEVVMTT QKSNYAPEIE RVCKALEAVN LWSSEPLKSQ  300
KFEVGDGLNQ AALPEILEIL KSACETHNLP LAQTWVPCIQ QGKGGCRHSA ANVIHCISTV  360
DSACYVNDPA FKDFQEACSE HHLLKGQGVV GQAFTTNQPC YFPDIASYRK TDYPLSHHAR  420
IFNLCGVVAI RLRSTFTENI DYVLEFFLPV DCKEPEEQKA LLNSLSIIIQ NVCRSLRIVT  480
DKELVEEGSV VSGIEAVKVE EISQETPVDL IGTQVRESGS GDGVFGNDGG NKRPPERRRG  540
GAKTEKTITL EMLRQYFAGS LKDAAKNLGV CPTTLKRICR QHGIQRWPSR KIKKVGHSLQ  600
KIQLVMDSVH GASGSFQIES FYSNFPKLAS SDPKTSSFSA SKFHNVDSKP IEGLVKSSLS  660
PSCSQTSSSG QSCSSGTHPY PHPRTPTAED SGNCGLKRAR SDAELHVSLY SEDQEQKVLQ  720
RSHSHKSLTE LPITPKLPPK GEHVQRVKVT YGEEKIRFRL QKDWGYGHLL QEIAKRFCIN  780
DMNEYHLKYF DDDSEWVLLT CDADLEECID VYRLCQNATI KLALFEPQLV AGSLGSTVVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein