PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968840.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARF

Protein Properties

Length: 536aa MW: 60159.3 Da PI: 7.5547

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968840.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF + + XP_024968840.1 126 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TILAKDVHGQIWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSVVFL--RAD 216 89**************************997556555..89*******************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++++r+ XP_024968840.1 217 SGELCIGIRRA 227 999***996 PP
2	Auxin_resp	112.3	4.6e-37	264	347	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a ++++Fev+Y+Prast+eF+v+++ v++a++v++++GmRfkmafetedss++++ +Gt+++++ d+++WpnS+Wr+L+ XP_024968840.1 264 AANLAVNGQPFEVFYHPRASTPEFCVRASIVKAAMRVQWCPGMRFKMAFETEDSSRISWfMGTISSLHVHDQIHWPNSPWRLLQ 347 789999****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence
MISVMNYVKP PMNEGDKCLD SQLWHACAGG MVQMPPLNSK VFYFPQGHAE HAASGNVNFG 60 DFPRIPSFIL CRVSALRFMA DADTDEVYAK IGLVPLRNQN DDDDDDNGIL GFDQNKKKNE 120 ENPTSFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYTAD PPVQTILAKD VHGQIWKFRH 180 IYRGTPRRHL LTTGWSNFVN HKKLVAGDSV VFLRADSGEL CIGIRRAKRG VLDSSLYGGG 240 FSGESYKVLR NPKGKYSVES VIEAANLAVN GQPFEVFYHP RASTPEFCVR ASIVKAAMRV 300 QWCPGMRFKM AFETEDSSRI SWFMGTISSL HVHDQIHWPN SPWRLLQVSW DEPDLLQNVK 360 RVSPWLVEMV SNIPAIHLSP FSPPRKKLRI PQPPDFPLCQ LPITSNNIPI PTSIQGARHN 420 SQFGSDQYNK TQSFPSGILN HDPLRRFMET TKENVSCLLT IGNSCSKKNN DDEEKDKKKP 480 MFVLFGQPIL TEQQLSESWS GVSDGSVVLE NGPVETSSGP WFKEEKSEFG LRLVDF

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence

MISVMNYVKP PMNEGDKCLD SQLWHACAGG MVQMPPLNSK VFYFPQGHAE HAASGNVNFG  60
DFPRIPSFIL CRVSALRFMA DADTDEVYAK IGLVPLRNQN DDDDDDNGIL GFDQNKKKNE  120
ENPTSFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYTAD PPVQTILAKD VHGQIWKFRH  180
IYRGTPRRHL LTTGWSNFVN HKKLVAGDSV VFLRADSGEL CIGIRRAKRG VLDSSLYGGG  240
FSGESYKVLR NPKGKYSVES VIEAANLAVN GQPFEVFYHP RASTPEFCVR ASIVKAAMRV  300
QWCPGMRFKM AFETEDSSRI SWFMGTISSL HVHDQIHWPN SPWRLLQVSW DEPDLLQNVK  360
RVSPWLVEMV SNIPAIHLSP FSPPRKKLRI PQPPDFPLCQ LPITSNNIPI PTSIQGARHN  420
SQFGSDQYNK TQSFPSGILN HDPLRRFMET TKENVSCLLT IGNSCSKKNN DDEEKDKKKP  480
MFVLFGQPIL TEQQLSESWS GVSDGSVVLE NGPVETSSGP WFKEEKSEFG LRLVDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein