PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968927.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 641aa MW: 71811.5 Da PI: 7.2294

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968927.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	63	84	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C + F ++ n++rHir+H XP_024968927.1 63 KCDKCAREFCSPINYRRHIRVH 84 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence
MKAEEGSDSL DTFIRQAVGK EPLFSFSRTG DSPMQWIQLL HALDQQDLPG WPLLTPMKVQ 60 MQKCDKCARE FCSPINYRRH IRVHRRSLNF HKESQKYRDL LGAFWDKLSY EDAKDIMSFK 120 DVNLEEVAGS SIVRNITANL RKPIFLSLPQ VYVKAGSVLV DIIQGRPSRL PISSQELFSI 180 LDDASERTFL SAGTAESLQK FIFDGEAGKI GLEIKNLIAC TSFLAEQRLV KAWLADKDAE 240 ALRCQKLLVE EEEAAQRRQA EILERKRQRK LRQKEQRARD QSNEVKGDLY AASDVFETTP 300 STETSSLPTS SGVDLLIPDE DVLMPLETIQ FSNNEEDVNI ESQGGCSSDH SDSTAQNNTK 360 HPKAQTNDLH HLVTRWQVPK LQKGGRNGFH GNQNVNTLKR EQSHKHREQR APLVNSSKIW 420 TKKPKPENGG ELVKSRVQND AINQSNCQLM IGSISVTVRS PSQHQANNQA NEVQESGNME 480 VKKSSVQTGT NRSTVKIWRP RHDSRGQLAD SRSNKVMEED AKGDIEIPTA TESCCQSNDE 540 TDECQPLPFV EDGGKPEAML FSVDAAKAFL AQRWKEAISG DHSKLVLAEP PGEGDGHESQ 600 ERAENRIVSM ESSSHNTNVR GKFATKGVKT KYIPKQRGGG N

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence

MKAEEGSDSL DTFIRQAVGK EPLFSFSRTG DSPMQWIQLL HALDQQDLPG WPLLTPMKVQ  60
MQKCDKCARE FCSPINYRRH IRVHRRSLNF HKESQKYRDL LGAFWDKLSY EDAKDIMSFK  120
DVNLEEVAGS SIVRNITANL RKPIFLSLPQ VYVKAGSVLV DIIQGRPSRL PISSQELFSI  180
LDDASERTFL SAGTAESLQK FIFDGEAGKI GLEIKNLIAC TSFLAEQRLV KAWLADKDAE  240
ALRCQKLLVE EEEAAQRRQA EILERKRQRK LRQKEQRARD QSNEVKGDLY AASDVFETTP  300
STETSSLPTS SGVDLLIPDE DVLMPLETIQ FSNNEEDVNI ESQGGCSSDH SDSTAQNNTK  360
HPKAQTNDLH HLVTRWQVPK LQKGGRNGFH GNQNVNTLKR EQSHKHREQR APLVNSSKIW  420
TKKPKPENGG ELVKSRVQND AINQSNCQLM IGSISVTVRS PSQHQANNQA NEVQESGNME  480
VKKSSVQTGT NRSTVKIWRP RHDSRGQLAD SRSNKVMEED AKGDIEIPTA TESCCQSNDE  540
TDECQPLPFV EDGGKPEAML FSVDAAKAFL AQRWKEAISG DHSKLVLAEP PGEGDGHESQ  600
ERAENRIVSM ESSSHNTNVR GKFATKGVKT KYIPKQRGGG N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	271	ERKRQRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-130	C2H2 family protein