PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968974.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ERF

Protein Properties

Length: 338aa MW: 38038.1 Da PI: 4.5843

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968974.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.9	2.5e-18	84	133	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GVr++ +g+WvAeIr+p + r r +lg+fg+a eAa a+++a++ ++g XP_024968974.1 84 NFRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFGSAVEAALAYDEAARVMYG 133 69**999.******8...3.35********************99887 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MFINRNTEMG QPSSTAMDSS RKRKSRSRRE GPKGVAETLA KWKEFNNKID SLDEKAKPTR 60 KVPAKGSKKG CMKGKGGPEN SRCNFRGVRQ RTWGKWVAEI REPNRGSRLW LGTFGSAVEA 120 ALAYDEAARV MYGPCARLNL PSCRSMSDYS QMVSNASTAG SSCDSTTTCS HSEGESKRET 180 VALKDEGESN SPCDPKHEDG QLSMVKVEVK EEPMEEEEEE EVRVKEEADN HVDEMFDMDE 240 LLEMMEQRSP HTKQERGTTA YEQDKQEQDG VGYGYEWCMA EDGFREPPWF EKEPVSPADK 300 QQQEEDGYGF DFLMPGRPEE CNFTLEELGL DLGGDLGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	25	SRKRKS
2	23	30	RKSRSRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05410.2	5e-33	ERF family protein