PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968975.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ERF

Protein Properties

Length: 330aa MW: 37031.9 Da PI: 4.575

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968975.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.9	2.5e-18	76	125	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GVr++ +g+WvAeIr+p + r r +lg+fg+a eAa a+++a++ ++g XP_024968975.1 76 NFRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFGSAVEAALAYDEAARVMYG 125 69**999.******8...3.35********************99887 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MGQPSSTAMD SSRKRKSRSR REGPKGVAET LAKWKEFNNK IDSLDEKAKP TRKVPAKGSK 60 KGCMKGKGGP ENSRCNFRGV RQRTWGKWVA EIREPNRGSR LWLGTFGSAV EAALAYDEAA 120 RVMYGPCARL NLPSCRSMSD YSQMVSNAST AGSSCDSTTT CSHSEGESKR ETVALKDEGE 180 SNSPCDPKHE DGQLSMVKVE VKEEPMEEEE EEEVRVKEEA DNHVDEMFDM DELLEMMEQR 240 SPHTKQERGT TAYEQDKQEQ DGVGYGYEWC MAEDGFREPP WFEKEPVSPA DKQQQEEDGY 300 GFDFLMPGRP EECNFTLEEL GLDLGGDLGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	17	SRKRKS
2	15	22	RKSRSRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05410.2	4e-33	ERF family protein