PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024968998.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 714aa MW: 79055.4 Da PI: 5.3618

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024968998.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103	1.7e-32	238	294	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ d++++ei+Y+g Hnh+ XP_024968998.1 238 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSR-DGHITEIIYKGAHNHQ 294 7**************************************.*************7 PP
2	WRKY	105.9	2.1e-33	440	498	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagCpv+k+ver+++d k v +tYeg+Hnhe XP_024968998.1 440 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCPVRKHVERASDDLKSVLTTYEGKHNHE 498 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence
MTEKDENGGD CGDDDEWGDL ITTPNRLISD DFLVLKAENI GNDEEKEGKL EDQEQESRVC 60 SDVVEDISVS VSSSPATAWS QFLTIPSGIS PTSLLELDSP IMLPNSQASP TTGTLPYPPL 120 NHEILGMNSA VEDRISDNGS FTYPSHGGSL LWPCIPDLQN QNSAMQPTIP SEFSGTLSKE 180 RVTKGRPTEL EGFKAVKSTI RNANNAATIK STEGDHTKRH LLDGYPKETT QATMRNSEDG 240 YNWRKYGQKQ VKGSEYPRSY YKCTHPNCQV KKKVERSRDG HITEIIYKGA HNHQGHRNVI 300 GSPASFSDSG SYIKIEEGEV WGNNNIGTRQ DWTPDGMELS SSTSVVTDNS DIISPTQGKS 360 MGIFESAGNP ELSSSNGNCE FNEEDGTNVG MLSPGDDADE DKSDLKRRKK GNFLLETSLV 420 SRAMREPRVV VQIESDVDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTSAG CPVRKHVERA 480 SDDLKSVLTT YEGKHNHEVP VSRNSSHATM DVGSASNTPN SLSLPRISNV PKSEPQVQDL 540 PLRYARKLTN EYIPSNFVGN FDPEPTKFEA SSIYQTKYVP FQSPISFGSV LPDYPLSLPM 600 TIPPSGHMVH NGFGFNNNGK RTHEAQSQSF IQNNGRFIKP KVEQDDGFYE NVLRVPDRVN 660 DASSASRISY YGFCNFGYLG QLTCTDWMPL ATTNGVESSK VNLRGVNEPN RVKY

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence

MTEKDENGGD CGDDDEWGDL ITTPNRLISD DFLVLKAENI GNDEEKEGKL EDQEQESRVC  60
SDVVEDISVS VSSSPATAWS QFLTIPSGIS PTSLLELDSP IMLPNSQASP TTGTLPYPPL  120
NHEILGMNSA VEDRISDNGS FTYPSHGGSL LWPCIPDLQN QNSAMQPTIP SEFSGTLSKE  180
RVTKGRPTEL EGFKAVKSTI RNANNAATIK STEGDHTKRH LLDGYPKETT QATMRNSEDG  240
YNWRKYGQKQ VKGSEYPRSY YKCTHPNCQV KKKVERSRDG HITEIIYKGA HNHQGHRNVI  300
GSPASFSDSG SYIKIEEGEV WGNNNIGTRQ DWTPDGMELS SSTSVVTDNS DIISPTQGKS  360
MGIFESAGNP ELSSSNGNCE FNEEDGTNVG MLSPGDDADE DKSDLKRRKK GNFLLETSLV  420
SRAMREPRVV VQIESDVDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTSAG CPVRKHVERA  480
SDDLKSVLTT YEGKHNHEVP VSRNSSHATM DVGSASNTPN SLSLPRISNV PKSEPQVQDL  540
PLRYARKLTN EYIPSNFVGN FDPEPTKFEA SSIYQTKYVP FQSPISFGSV LPDYPLSLPM  600
TIPPSGHMVH NGFGFNNNGK RTHEAQSQSF IQNNGRFIKP KVEQDDGFYE NVLRVPDRVN  660
DASSASRISY YGFCNFGYLG QLTCTDWMPL ATTNGVESSK VNLRGVNEPN RVKY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26440.1	6e-85	WRKY family protein