PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024969028.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 159aa    MW: 18299.5 Da    PI: 9.6425
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024969028.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.45.7e-11748344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i ++  r+ t+ kR+  ++KK +EL  LCd+++++i++ ++g
  XP_024969028.1  7 IADEKARNETLKKRKPNLIKKMNELKSLCDVDACLIMYDKNG 48
                    778889999*****************************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    
MVKYQYIADE KARNETLKKR KPNLIKKMNE LKSLCDVDAC LIMYDKNGAA PEVWPNPLEA  60
ERVLHKFQEA TTGAPASATL DQIAFLQKSI SKMKKQLQKE KEKNQRRMML RMLFDKDAPS  120
PQTPEELKIL LATIDREIKV VDRLIEEAKG KEISLDLSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.22e-16M-type_MADS family protein