PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024969053.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 773aa    MW: 85133.9 Da    PI: 5.3178
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024969053.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82e-23141242199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+ltpsd++++g +++p++ ae+       + +++ +++l+++d++ ++W++++iyr++++r++lt+GW+  v a++Lk+gD v+F   ++++
  XP_024969053.1 141 FCKTLTPSDTSTHGGFSVPRRAAERLfppldfSTQPP-TQELIVRDLHENTWTFRHIYRGQPKRHLLTTGWSMLVGAKRLKAGDAVIFI--RDEK 232
                     99*********************999*****844443.359************************************************..4567 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++v+r+
  XP_024969053.1 233 SQLLLGVRRA 242
                     7789999997 PP
2Auxin_resp113.71.7e-37267350183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv++++k++k+++ +++svGmRf m+feteds + r++Gt++g+sd+dp+rWp+SkW +L+
  XP_024969053.1 267 AAHAAANQSPFSIFYNPRACPSEFVIPLAKYRKSVHgIQLSVGMRFGMMFETEDSGKHRYMGTITGISDVDPLRWPDSKWHNLQ 350
                     79*********************************99********************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    
MSIIIEEKLR SSSSVSSEMK LLMEMQDHCG VKRAINSELW HACAGPLITL PQVGSLVYYF  60
PQGHSEQVAA TTNRTATTQV PNYPNLPSQL LCQVLNATLH ADKDTDEIYA QMSLQPLNSE  120
KDVFPITDFG TKPSRHPSEF FCKTLTPSDT STHGGFSVPR RAAERLFPPL DFSTQPPTQE  180
LIVRDLHENT WTFRHIYRGQ PKRHLLTTGW SMLVGAKRLK AGDAVIFIRD EKSQLLLGVR  240
RANRQQTASP SSILSADSMH IGVLAAAAHA AANQSPFSIF YNPRACPSEF VIPLAKYRKS  300
VHGIQLSVGM RFGMMFETED SGKHRYMGTI TGISDVDPLR WPDSKWHNLQ VEWEDPGCGG  360
KRSRVSPWDI ETPESLFIFP SLTSNLKRPF GHGYVGDQTE WGNMVTRPFM RAPEAINSLW  420
SEQLIKMSRK PQTVNGMGSV SPVIQEACAA NRAPLQEAKA SILASSETVK SESSQLTSSD  480
DDKLSVKPAM NPPNLINEQP IVNQLSPLDS SLLNDQQFVS PELDPSLSGL FPYSSIGEET  540
WDPRDDIYGC LNFECSNGGS TVVDPSVSST GLDGFCAPKA GAFQNPSEFI VNNNLCSSQD  600
VQSQFTSSSL VDSQAYTVQE LPDNSGGTSS SNGEFNGTGL VQNSSWHQVI PPPRVRTYTK  660
IQKAGSVGRS IDVSSFKNYD ELCCAIERMF GLEGLLNDSV GSGWKLVYVD FENDVLLVGD  720
DPWEEFVGCV RCIRILSPCE VRQMGEEGMQ LLNNSTAALQ ALMTVRHQTP ETA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein