PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969188.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 350aa MW: 39186.5 Da PI: 7.028

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969188.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101	8e-32	75	128	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH rF++av++LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+ XP_024969188.1 75 PRLRWTPELHLRFIHAVDKLGGQERATPKLVLQLMNIKGLSISHVKSHLQMYRS 128 9****************************************************7 PP
2	Myb_DNA-binding	54	3.8e-17	76	127	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e+++++++av +lGg t+k++ + m+ kg++ ++ks++q+y+ XP_024969188.1 76 RLRWTPELHLRFIHAVDKLGGQeraTPKLVLQLMNiKGLSISHVKSHLQMYR 127 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MDTNPGLQRG TICVDIDLYG KDDDDDEFEA VDHNSASTSR PKNGSTSSNS TVEESDKKAN 60 SATGSVRPYV RSKNPRLRWT PELHLRFIHA VDKLGGQERA TPKLVLQLMN IKGLSISHVK 120 SHLQMYRSKK INDPNQVVSE QGLVYEGDDH HIYNLSQLPM LQSFAQNSIS SFRVSDGLWS 180 RNTNRTDYNP FLSGLRHGAY GSRMDQRLIV GRSNNSSLRW LGSSNIEKSQ LRLFGNENNG 240 LLKDDPIRSR SQMDETNAIS KDIIVDDQDK MPLKRKVIDQ PEPGNLDLDL SLQIKTREDD 300 DTRNEEVDES GLSLSLFSSF STKSPSSIRR SKHAKTMGCS SSGTTLDLTL

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MDTNPGLQRG TICVDIDLYG KDDDDDEFEA VDHNSASTSR PKNGSTSSNS TVEESDKKAN  60
SATGSVRPYV RSKNPRLRWT PELHLRFIHA VDKLGGQERA TPKLVLQLMN IKGLSISHVK  120
SHLQMYRSKK INDPNQVVSE QGLVYEGDDH HIYNLSQLPM LQSFAQNSIS SFRVSDGLWS  180
RNTNRTDYNP FLSGLRHGAY GSRMDQRLIV GRSNNSSLRW LGSSNIEKSQ LRLFGNENNG  240
LLKDDPIRSR SQMDETNAIS KDIIVDDQDK MPLKRKVIDQ PEPGNLDLDL SLQIKTREDD  300
DTRNEEVDES GLSLSLFSSF STKSPSSIRR SKHAKTMGCS SSGTTLDLTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	5e-51	G2-like family protein