PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969339.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 463aa MW: 52020.2 Da PI: 7.0405

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969339.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.2	6e-08	241	261	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f + G+C+ Gd C FaHg XP_024969339.1 241 PCPDFKK-GQCRLGDVCEFAHG 261 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MVGSNYLLEF AANNNVEGFK RLITPIASAI NEVGLWYGRQ RNSKRMLMEH RTPLMIAATY 60 GSLDVVKLIL SLSEADVNSS CGPDKTTSLH CAASSGSVNA FDVIKILLKS GADPELVDAD 120 GRRPVDVVFV PPNLSGMKDS LEKLLQNGAY GIEQEDFGLA SLKSNLDCVC MSYEKKEYPI 180 DPFFPDLKSD AYSTDEFRMF AFKIRPCSRA YSHDWTECPF IHPGESARRR DPRKIHYSCV 240 PCPDFKKGQC RLGDVCEFAH GVFECWLHPA QYRTRLCKDE NFCARRVCFF AHTPEELRPL 300 YVSSGSAMPS PRGSPAAAST MSPPPFSPPP TMQLHDGNLQ ASRLRLSFNA RDIQAEEVKL 360 LLDLEMNQRH QVGVFSPSQR PVVLNRLYPM NPYSPNGFDH MSSYGKQSQL SLVKETAAKG 420 SEMEPPPETE KKKDMGAWFA NMQLDEMVVW YDSNRDSGPR RER

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MVGSNYLLEF AANNNVEGFK RLITPIASAI NEVGLWYGRQ RNSKRMLMEH RTPLMIAATY  60
GSLDVVKLIL SLSEADVNSS CGPDKTTSLH CAASSGSVNA FDVIKILLKS GADPELVDAD  120
GRRPVDVVFV PPNLSGMKDS LEKLLQNGAY GIEQEDFGLA SLKSNLDCVC MSYEKKEYPI  180
DPFFPDLKSD AYSTDEFRMF AFKIRPCSRA YSHDWTECPF IHPGESARRR DPRKIHYSCV  240
PCPDFKKGQC RLGDVCEFAH GVFECWLHPA QYRTRLCKDE NFCARRVCFF AHTPEELRPL  300
YVSSGSAMPS PRGSPAAAST MSPPPFSPPP TMQLHDGNLQ ASRLRLSFNA RDIQAEEVKL  360
LLDLEMNQRH QVGVFSPSQR PVVLNRLYPM NPYSPNGFDH MSSYGKQSQL SLVKETAAKG  420
SEMEPPPETE KKKDMGAWFA NMQLDEMVVW YDSNRDSGPR RER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-150	C3H family protein