PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024969542.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 100aa    MW: 11443.8 Da    PI: 9.8468
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024969542.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.11e-081558344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +++ +a + + ++   +W+ Iar +g g++ +++k ++
   XP_024969542.1 15 SWTPRQNKQFEEALAYYNKDspdRWHNIARAVG-GKSVEEVKRHY 58
                     7*****************99*************.**********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    
MASSSMTSSR SSGSSWTPRQ NKQFEEALAY YNKDSPDRWH NIARAVGGKS VEEVKRHYEI  60
LVRDIMQIES DQVPLPNYRD IGSNGRGFAN EQRLLKNLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.28e-37MYB_related family protein