PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969562.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 436aa MW: 48670.4 Da PI: 5.3858

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969562.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	110.3	9.9e-35	223	277	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav+qLGGse+AtPk +l+lm+v+gLt++hvkSHLQkYR+ XP_024969562.1 223 KPRMRWTPELHESFVEAVNQLGGSERATPKGVLKLMNVEGLTIYHVKSHLQKYRT 277 79****************************************************8 PP
2	Myb_DNA-binding	57.2	3.8e-18	225	276	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e++e +v+av+qlGg t+k + + m+ +g+t +++ks++qky+ XP_024969562.1 225 RMRWTPELHESFVEAVNQLGGSeraTPKGVLKLMNvEGLTIYHVKSHLQKYR 276 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MNGKKWTYTA LCVQRSGEKQ LNNMGASGTM SSSIPVIPAL EGKYQKLADS FPVISEKELS 60 NTLLPDRNQM VSDSGLQNSP LVSRPSSDIV PIQVNQTSHF VNAQSASLVG YTGQNNAMSW 120 SAESLQDILD FPENVTGGNS QIETHNSLMP SGDNGRGTDW QKWADQLMSV EDNMDSNWSE 180 ILADVDVPTL EPKQIQTVSR PPVPTTIEAY PVSSPSSTGA SIKPRMRWTP ELHESFVEAV 240 NQLGGSERAT PKGVLKLMNV EGLTIYHVKS HLQKYRTARY KPELSEGTSE KKTSSIDEMV 300 SMDIKNKSLG FTDALKLQME VQKQLHEQLE IQRNLQLRIE EQGKYLQMMF EQQRKMENER 360 QKPSSSSLDD NPTEKPKASE RDDQCISDKD PKNSTEKSSQ KSTSQIEVQD VNKTNIDSRC 420 SPRPNKRARP DEATMS

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MNGKKWTYTA LCVQRSGEKQ LNNMGASGTM SSSIPVIPAL EGKYQKLADS FPVISEKELS  60
NTLLPDRNQM VSDSGLQNSP LVSRPSSDIV PIQVNQTSHF VNAQSASLVG YTGQNNAMSW  120
SAESLQDILD FPENVTGGNS QIETHNSLMP SGDNGRGTDW QKWADQLMSV EDNMDSNWSE  180
ILADVDVPTL EPKQIQTVSR PPVPTTIEAY PVSSPSSTGA SIKPRMRWTP ELHESFVEAV  240
NQLGGSERAT PKGVLKLMNV EGLTIYHVKS HLQKYRTARY KPELSEGTSE KKTSSIDEMV  300
SMDIKNKSLG FTDALKLQME VQKQLHEQLE IQRNLQLRIE EQGKYLQMMF EQQRKMENER  360
QKPSSSSLDD NPTEKPKASE RDDQCISDKD PKNSTEKSSQ KSTSQIEVQD VNKTNIDSRC  420
SPRPNKRARP DEATMS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.2	2e-83	G2-like family protein